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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART10G08060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | CAMTA | ||||||||
Protein Properties | Length: 1149aa MW: 127610 Da PI: 6.8352 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 179.4 | 4.4e-56 | 138 | 255 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 lke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+++vl+cyYah+een++f OBART10G08060.1 138 LKEaQQRWLRPAEICEILKNYKSFRIAPEPPNRPQSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEENENF 231 45559***************************************************************************************** PP CG-1 95 qrrcywlLeeelekivlvhylevk 118 qrr+yw+Lee++ +ivlvhyle+k OBART10G08060.1 232 QRRTYWMLEEDFMHIVLVHYLETK 255 *********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.93 | 134 | 260 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.5E-77 | 137 | 255 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 9.8E-50 | 140 | 253 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 0.00609 | 569 | 657 | No hit | No description |
Gene3D | G3DSA:2.60.40.10 | 2.0E-6 | 569 | 655 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 3.42E-18 | 570 | 656 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 2.1E-8 | 570 | 648 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 2.95E-15 | 762 | 865 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.8E-16 | 764 | 867 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.69E-11 | 765 | 863 | No hit | No description |
PROSITE profile | PS50297 | 15.459 | 771 | 865 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 8.736 | 804 | 836 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 9.03E-8 | 965 | 1017 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.37 | 966 | 988 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.748 | 967 | 996 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.026 | 968 | 987 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0059 | 989 | 1011 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.542 | 991 | 1014 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.3E-4 | 992 | 1011 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1149 aa Download sequence Send to blast |
MTCRTQGQNR LSPHPATVIQ QVSNSLCLSS TRSHRSIPET SEVKTSLLLL LLFISPPNIP 60 HKKRKKEKTQ TPSRGGRERS PAPLRSPGVR ACGARRASHG GGAAAGAHAS ASIPPTTAMA 120 ADARRFAVVP QLDIAQILKE AQQRWLRPAE ICEILKNYKS FRIAPEPPNR PQSGSLFLFD 180 RKVLRYFRKD GHNWRKKKDG KTVKEAHERL KSGSIDVLHC YYAHGEENEN FQRRTYWMLE 240 EDFMHIVLVH YLETKGGKSR TRGNNDMHQA AVMDSPLSQL PSQTIDGESS LSGQFSEYEE 300 AESGGTGYHS FTQMQQQQNG IGPVTDASMF SSRVSASSIG NYQGQHAMGH TTNFYSSNQH 360 DSPLVLSDPN LELENNGHES LWNGVMKPDE GTVQMTHLQP PVHPEQGMFT TEGQGVEYLT 420 FDEVYSDGLS LKDIGAAGAD VEPFWQFSSN SYLTEAIAFQ LSSATADISA TENSVQQNDG 480 SLGAAIGFPF LKTQSSNLSD ILKDSFKKSD SFTRWMSKEL LDVEDSQIQS SSGAYWNTEE 540 ADSIIEASSR EPLDQFTVAP MVLQDQLFSI VDFSPSWTYA GSKTKVLVTG RFLHANEVTE 600 RCKWSCMFGE VEIQAEISAD GTLRCYSPPH KPGRVPFYVT CSNRLACSEV REFEFRPSDS 660 QYMDAPSPLG ATNKVYFQIR LDNLLSLGPD VYQATITNPS KEMIDLSKKI SSLLANNDEW 720 SKLLKLADDN EPLSHDQQDQ YAENLIKEKL HVWLLHKVGD GGKGPSVLDD EGLGVLHLAA 780 SLGYDWAIRP TVTAGVNINF RDFHGWTALH WAAFCGRERT VVALIALGAA PGALTDPHPN 840 YPAESTPADL ASANGHKGIS GFLAESSLTS HLQALNLKEA NMSEISGLPG IGDITERNAS 900 QPAIGDSLGA VRNAAQAAAR IYQVFRVQSF QRKQAVQYEG DKGGISDEHA LSLLSMKPSK 960 SGQIDPLHAA ASRIQNKYRG WKGRKEFLLF RQRIVKIQAH VRGHQVRKHY RKIVWSVGIV 1020 EKVILRWRRR RAGLRGFRPT EGAIESSSGG TSSNLVTDKP AGDDYDFLQE GRKQTEERLQ 1080 KALARVKSMV QYPEARDQYQ RILNVVSKMQ ESQTVQEKIL DESTEMDEGD FMSEFKELWD 1140 DDTPLPGYF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 65 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105116 | 0.0 | AK105116.1 Oryza sativa Japonica Group cDNA clone:001-100-H10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614396.1 | 0.0 | calmodulin-binding transcription activator 3 isoform X1 | ||||
TrEMBL | A0A0D3HD11 | 0.0 | A0A0D3HD11_9ORYZ; Uncharacterized protein | ||||
STRING | OBART10G08060.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |