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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OBART10G00650.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 282aa MW: 30814.6 Da PI: 10.3377 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART10G00650.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 38.7 | 3.5e-12 | 4 | 110 | 9 | 86 |
GAGA_bind 9 rnkg.yyepaaslkenlglqlmssia.erdakirernlalsekkaavaerd.............................maflqrdkalaern 71
r +g +yep ++nlglqlmss++ +rd+k+ + + + + +a+++r+ m+f+++d++++ ++
OBART10G00650.1 4 RGWGaFYEPP---ARNLGLQLMSSVPaDRDTKQLLSVACPAPPPSAHHPREcgananananandgampppaateappsmlMNFVRNDMWMHPQQ 94
88999***99...88**********99******7777778888888888888888888888888999************************966 PP
GAGA_bind 72 k.alverdnkllalll 86
+ ++++r+ k+++ ++
OBART10G00650.1 95 QhHHHPREPKMMQHQP 110
5166789999999887 PP
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| 2 | GAGA_bind | 218.9 | 4.6e-67 | 105 | 273 | 107 | 275 |
GAGA_bind 107 sidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad.erskaekksidlvl 198
++++ + +pq ++++ + ++ee+++ + +ee++++++e + +kkrq++++pk+++ kk+kk +++++++ +++sa+ +r++ + k+i++v+
OBART10G00650.1 105 MMQHQPE-PQPQPQPPPSPpHPKEECISPPLMEENVPVISEPPPPKKRQQGRQPKVPRPKKPKK-PAAPREDGAPPSAPaPRRRGPMKNIGMVI 196
3443333.44777777777799******************************************.9999********999************** PP
GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaae 275
ng++lD s++P+P+CsCtGa++qCY+WG+GGWqSaCCttt+S+yPLP+stkr gaRia rKm +gafkk+LekLa+e
OBART10G00650.1 197 NGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACCTTTVSTYPLPMSTKRHGARIASRKMNHGAFKKVLEKLAGE 273
***************************************************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MGLRGWGAFY EPPARNLGLQ LMSSVPADRD TKQLLSVACP APPPSAHHPR ECGANANANA 60
NANDGAMPPP AATEAPPSML MNFVRNDMWM HPQQQHHHHP REPKMMQHQP EPQPQPQPPP 120
SPPHPKEECI SPPLMEENVP VISEPPPPKK RQQGRQPKVP RPKKPKKPAA PREDGAPPSA 180
PAPRRRGPMK NIGMVINGID LDLSRIPTPI CSCTGAPQQC YRWGAGGWQS ACCTTTVSTY 240
PLPMSTKRHG ARIASRKMNH GAFKKVLEKL AGEATILIIR LT
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC078891 | 0.0 | AC078891.2 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0092N12, complete sequence. |
| GenBank | AC145127 | 0.0 | AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence. |
| GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
| GenBank | AY570520 | 0.0 | AY570520.1 Oryza sativa (japonica cultivar-group) barley B recombinant like protein C gene, complete cds. |
| GenBank | AY570521 | 0.0 | AY570521.1 Oryza sativa (japonica cultivar-group) barley B recombinant like protein C mRNA, complete cds. |
