PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G15750.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 407aa    MW: 43712.4 Da    PI: 7.479
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G15750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.71.1e-4045121278
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      C v+gC+adls+ ++yhrrhkvCe hsk+pvv+vsg+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+qa
  OBART09G15750.1  45 CAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQA 121
                      **************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-3637106IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.92342119IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-3843124IPR004333Transcription factor, SBP-box
PfamPF031109.9E-3245118IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDWDLKMPVS WDLAELEHNA VPPSTSTLKR PRGGGGGGGG QCPSCAVDGC KADLSKHRDY  60
HRRHKVCEPH SKTPVVVVSG REMRFCQQCS RFHLLGEFDE AKRSCRKRLD GHNRRRRKPQ  120
ADSMSSGSFM TSQQGTRFAS FTPPRPEPSW PGIIKSEETP YYSHHHHPHP VMTSRQPHFV  180
GSPSSATTAA FSPKEGRRFP FLHEGDQISF GGGGGAAAAA TLEISVCQPL LKTTVVAPPP  240
PESSSSNKMF SSDGLTTATT TTTTAHHHHH HHQVLDSDCA LSLLSSPANS SSVDPDGPAV  300
TGGGAGAEHH HHHHHHQIPM AQPLVPNLQQ QFGGSSPWFA SSPAAAAVAG GGFACPSMDS  360
EQQQQQQLNA VLVPGSNENE MNYHGMFHVG GEGSSDGTSP SLPFSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-2735118184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101118KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1087590.0AC108759.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876170.10.0squamosa promoter-binding-like protein 18 isoform X3
SwissprotQ0J0K10.0SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A0D3H8P60.0A0A0D3H8P6_9ORYZ; Uncharacterized protein
STRINGOBART09G15750.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-39SBP family protein