PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART09G15400.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 370aa MW: 38701 Da PI: 4.8282

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART09G15400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.4e-09	188	235	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq OBART09G15400.1 188 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 235 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-17	182	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.56E-10	182	239	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-17	184	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	184	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-6	188	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-10	190	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MDSDYVAGLL MSAAAAGLDL GVLDGGGGAF LETLCGGPGF AERAARLCGG GGGGGAGLFG 60 LPAAGNAERG GCSREGSSVS DPAWAHATGG GGDNARKRKA PASAAAGKDK DAVVGSGSSP 120 CEVGEAKAPD SKKCKAEVNP KVEEAASDGS VGDRVQKQGK GKNSSKPAAE PPKDYVHVRA 180 RRGQATDSHS LAERVRREKI SQRMKVLQDL VPGCNKVVGK ALMLDEIINY VQSLQQQVEF 240 LSMKLATVNP QLDFGNLSTL LQKDMFQSCG PSVNSVFPLE SAGTAFPFCD QADFFQSFGL 300 GAMENQCSLD LANTALPHTG STQYAFQKQQ RDLWEDNAFQ YNDEQSQEDA VSAPNFDGQL 360 QAADHTEIEF

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MDSDYVAGLL MSAAAAGLDL GVLDGGGGAF LETLCGGPGF AERAARLCGG GGGGGAGLFG  60
LPAAGNAERG GCSREGSSVS DPAWAHATGG GGDNARKRKA PASAAAGKDK DAVVGSGSSP  120
CEVGEAKAPD SKKCKAEVNP KVEEAASDGS VGDRVQKQGK GKNSSKPAAE PPKDYVHVRA  180
RRGQATDSHS LAERVRREKI SQRMKVLQDL VPGCNKVVGK ALMLDEIINY VQSLQQQVEF  240
LSMKLATVNP QLDFGNLSTL LQKDMFQSCG PSVNSVFPLE SAGTAFPFCD QADFFQSFGL  300
GAMENQCSLD LANTALPHTG STQYAFQKQQ RDLWEDNAFQ YNDEQSQEDA VSAPNFDGQL  360
QAADHTEIEF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK059036	0.0	AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651378.1	0.0	transcription factor BHLH089-like
Swissprot	Q9SRT2	5e-59	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0D3H8K2	0.0	A0A0D3H8K2_9ORYZ; Uncharacterized protein
STRING	OBART09G15400.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-53	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]