PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G15400.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 370aa    MW: 38701 Da    PI: 4.8282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G15400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.72.4e-09188235455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  OBART09G15400.1 188 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 235
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17182253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-10182239No hitNo description
Gene3DG3DSA:4.10.280.104.2E-17184252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6188235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10190240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MDSDYVAGLL MSAAAAGLDL GVLDGGGGAF LETLCGGPGF AERAARLCGG GGGGGAGLFG  60
LPAAGNAERG GCSREGSSVS DPAWAHATGG GGDNARKRKA PASAAAGKDK DAVVGSGSSP  120
CEVGEAKAPD SKKCKAEVNP KVEEAASDGS VGDRVQKQGK GKNSSKPAAE PPKDYVHVRA  180
RRGQATDSHS LAERVRREKI SQRMKVLQDL VPGCNKVVGK ALMLDEIINY VQSLQQQVEF  240
LSMKLATVNP QLDFGNLSTL LQKDMFQSCG PSVNSVFPLE SAGTAFPFCD QADFFQSFGL  300
GAMENQCSLD LANTALPHTG STQYAFQKQQ RDLWEDNAFQ YNDEQSQEDA VSAPNFDGQL  360
QAADHTEIEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590360.0AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651378.10.0transcription factor BHLH089-like
SwissprotQ9SRT25e-59BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A0D3H8K20.0A0A0D3H8K2_9ORYZ; Uncharacterized protein
STRINGOBART09G15400.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]