PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G14730.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 520aa    MW: 57500.4 Da    PI: 7.238
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G14730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.73.8e-11197240141
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 
                      e++ k  rr+++NReAAr+sR+RKka+i++Le    + ++Le+e
  OBART09G14730.1 197 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 240
                      6777999************************9633355555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.5E-9195245No hitNo description
SMARTSM003385.6E-7197296IPR004827Basic-leucine zipper domain
PfamPF001702.7E-8198240IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082199241IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.0E-7201242No hitNo description
PROSITE patternPS000360204219IPR004827Basic-leucine zipper domain
PfamPF141448.4E-28305379IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSGSESQQER EHRQQQEMNI SFGMMMNHGH HHYGQHQQQH HHHPPPSSSS SSSMHAAAAS  60
FIKEASAGAY DHLGELDQAL FMYLDHGSHA ASHQEQRQTL NIFPSQPMHV EPSPKGEISL  120
VLSPAAVGTK MARSPDHHHH HQQQAAAAME ELATGSRRQD HHHLQHQPFA AEPAGINRDV  180
KPVTAKKDHR RGVSTGERDP KTLRRLAQNR EAARKSRLRK KAYIQQLESS RIRLAQLEQE  240
LHTARAQGVF FPGSGGLIGE GGGGKGVLLG GIDGVGGGGG GGLSSEAAMF DVEYGRWQEE  300
HHRLMYELRA ALQQQLPEGE LQVYVESCLA HHDEVAAIKD GAIRGDVFHL ISGVWMSPAE  360
RCFLWLGGFR PSEVIKMLVA HVEPLTEQQI VGVYGLQQSA LETEEALTQG LDALYQSLSD  420
TVVSDALSCP SNVANYMGQM AVAINKLSTL EGFVRQAENL RQQTLHRLQQ VLTTRQMARS  480
LLAVSDYFHR LRTLSSLWVT RPRHPPHDHQ PPPHSAAPHT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1002100.0AK100210.1 Oryza sativa Japonica Group cDNA clone:J023043A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612566.10.0transcription factor TGA2 isoform X2
SwissprotQ52MZ21e-168TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A0D3H8C00.0A0A0D3H8C0_9ORYZ; Uncharacterized protein
STRINGOBART09G14730.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78763543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-132bZIP family protein