PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G13420.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 284aa    MW: 30488.5 Da    PI: 7.2519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G13420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.1e-1159115154
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC......TTS-STCHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkas...kapskKlsKaeiLekAveYIksL 54 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P+++      +   + a+i+  A++++k+L
  OBART09G13420.1  59 QRMTHIAVERNRRKQMNEYLAVLRSLMPPSYaqrYCLCAQGDQASIVGGAINFVKEL 115
                      79***************************7545533445567788888888888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.49E-1357120No hitNo description
Gene3DG3DSA:4.10.280.105.7E-1357120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1558133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.43458115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-859115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-864121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAPPPPPVEP ANCAENAGGV GDHQEDQAAV AAAATAVQAG RRKRRRARAA KNKEEVESQR  60
MTHIAVERNR RKQMNEYLAV LRSLMPPSYA QRYCLCAQGD QASIVGGAIN FVKELEQLLQ  120
SLEARKSSRQ CAAHDAAAAA APFASFFTFP QYSMSAAAAA APVAPVVNEV HGRDDGGAGT  180
AEAEASGSKP SAVADVEVTM VESHANLRVL SRRRPRQLLR LVVALQGHRL TVLHLNMTSA  240
GHMVLYSFSL KVEDDCQLTS VDEIATAAHQ IIEKIQEEQG CSLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14145RKRRR
25970RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612232.11e-135transcription factor bHLH94
RefseqXP_015612233.11e-135transcription factor bHLH94
SwissprotQ9C7T42e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D3H7W60.0A0A0D3H7W6_9ORYZ; Uncharacterized protein
STRINGOBART09G13420.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]