PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OBART09G13210.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 217aa MW: 23201.1 Da PI: 6.5398

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART09G13210.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.4	6.1e-14	29	78	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 rr+h+e+ r+RR+riN +++Lr l+P+a + +++Ka+ L ++v+Y+++L OBART09G13210.1 29 RRSHSEAQRKRRERINAHLDTLRGLVPSA---SRVRMDKAALLGEVVRYVRKL 78 99*************************...9****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.14E-13	26	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-14	27	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.688	27	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.23E-11	27	81	No hit	No description
Pfam	PF00010	2.7E-11	29	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-9	33	84	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	5.7E-4	123	191	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MVAARSGDDA ELGLDVECLA AAPRWTRARR SHSEAQRKRR ERINAHLDTL RGLVPSASRV 60 RMDKAALLGE VVRYVRKLRS EAAGSEAVVP GEGDEVVVEE EEVEVEGCSC DAGERQAARR 120 VKASVCCADR PGLMSELGDA ERSVSARAVR AEIATVGGRT RSVLELDVAR TAAAGGGSNG 180 ASQLPALQAA LRAVIMSQEE LLAVESYKQR RFSADFA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005755	0.0	AP005755.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBb0019B14.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025875916.1	1e-101	transcription factor bHLH131
TrEMBL	A0A0D3H7U1	1e-148	A0A0D3H7U1_9ORYZ; Uncharacterized protein
STRING	OBART09G13210.1	1e-149	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4114	35	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	1e-16	bHLH family protein