 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART09G12660.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bHLH |
| Protein Properties |
Length: 216aa MW: 22975.9 Da PI: 4.7544 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART09G12660.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 15.3 | 3.7e-05 | 142 | 176 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r+ +++ L++l+P +K++ a++L +A++Y+k L
OBART09G12660.1 142 RLSERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 176
7889999999999986.....8****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MDFDLFTSYP ESQLDLMSTM LQLEQLTALS DQSLFMAAPT SPPVSPMGTP SPQFSPPPQM 60
SVTTTTAGGG YQDQYNSMPA TYGAGAGVHQ LDFAMSSPGS DSGAPQGSSS SSSSEAMREM 120
IFHIAALQPV EIDPETVRPP ERLSERIRIL QRLVPGGTKM DTASMLDEAI HYVKFLKSQV 180
QSLERAAAAT GAAAHRAAAF GAAYPAALPM QHHAPW
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK060477 | 0.0 | AK060477.1 Oryza sativa Japonica Group cDNA clone:001-012-F09, full insert sequence. |
| GenBank | AK070458 | 0.0 | AK070458.1 Oryza sativa Japonica Group cDNA clone:J023048E05, full insert sequence. |
| GenBank | AP005655 | 0.0 | AP005655.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0025H07. |
| GenBank | AP006057 | 0.0 | AP006057.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1342C04. |
| GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
| GenBank | CT830314 | 0.0 | CT830314.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107C17, full insert sequence. |
