PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART09G10380.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 327aa    MW: 34751.2 Da    PI: 7.8697
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART09G10380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29165224159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed ++++ tYegeHnh+
  OBART09G10380.1 165 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSLLVATYEGEHNHP 224
                      58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.934160226IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-28161226IPR003657WRKY domain
SuperFamilySSF1182901.96E-25162226IPR003657WRKY domain
SMARTSM007742.8E-34165225IPR003657WRKY domain
PfamPF031062.9E-24166224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDAAWRGGVG CSPVCLDLCV GLSPVREPSA ARHELLDRPA GCRGGGDSKS MTNDEAMILE  60
AKVTQMSEEN RRLTEVIARL YGGQIARLGL DGSASPPRPV SPLSGKKRSR ESMETANSCD  120
ANSNRHQGGD ADHAESFAAD DGTCRRIKVS RVCRRIDPSD TSLVVKDGYQ WRKYGQKVTR  180
DNPSPRAYFR CAFAPSCPVK KKVQRSAEDS SLLVATYEGE HNHPHPSPRA GELPAAAGGA  240
GGSLPCSISI NSSGPTITLD LTKNGGAVQV IEAAHPPPPP DLKEVCREVA SPEFRTALVE  300
QMASALTSDP KFTGALAAAI LQKLPEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-211642261374WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981850.0DQ298185.1 Oryza sativa WRKY transcription factor 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610695.10.0WRKY transcription factor WRKY76
SwissprotQ6IEK50.0WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A0D3H6W80.0A0A0D3H6W8_9ORYZ; Uncharacterized protein
STRINGOBART09G10380.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-55WRKY DNA-binding protein 40