PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 306aa MW: 34808.5 Da PI: 8.0801

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART09G03640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	155	174	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + Cp C k+Fsr nL+ H+ OBART09G03640.1 155 FACPVCCKTFSRYNNLQMHM 174 78*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.19E-5	142	177	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-6	155	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13894	8.4E-4	155	177	No hit	No description
PROSITE profile	PS50157	10.284	155	182	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	157	177	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.538	259	295	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MANPSKDHIF PNQRSLISQS SSPHNSLPKK EEIPLLSLLP SIHDHNKIHG CYKQEKEEEV 60 MEDVDISLQI GLPSPDPNSS VIDFAKSNPL GATATTSQEL DGDDDDDHKV EVEREEEEEE 120 ASDDLCLDYF SMGKLTKGKY WIPTPTQILI GPTHFACPVC CKTFSRYNNL QMHMWGHGSQ 180 YRRGPESLRG TQPAAMLRLP CFCCAAGCRN NVDHPRARPL KDFRTLQTHY KRKHCAKPFA 240 CRKCGKPLAV RGDWRTHEKN CGRRWHCACG SDFKHKRSLK DHIRAFGRDH RERPPPPPPH 300 PLLPLP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC090054	0.0	AC090054.2 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence.
GenBank	AP006527	0.0	AP006527.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0603H10.
GenBank	AP006727	0.0	AP006727.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0645D04.
GenBank	AP014965	0.0	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015611093.1	0.0	zinc finger protein WIP2
Swissprot	Q8W031	1e-103	ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBL	A0A0D3H4M3	0.0	A0A0D3H4M3_9ORYZ; Uncharacterized protein
TrEMBL	I1QRT3	0.0	I1QRT3_ORYGL; Uncharacterized protein
STRING	ORGLA09G0176200.1	0.0	(Oryza glaberrima)
STRING	OBART09G03640.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51220.1	1e-101	WIP domain protein 5

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610]