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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART08G21560.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
MIKC_MADS |
Protein Properties |
Length: 171aa MW: 19410.4 Da PI: 9.593 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART08G21560.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 85.3 | 3.6e-27 | 17 | 66 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
rie+ + rqv fskRr g++KKA+ELSvLCda+va+++fs+ g+lye++s
OBART08G21560.1 17 RIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAQVALLVFSPAGRLYEFAS 66
8***********************************************86 PP
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2 | K-box | 15.1 | 9.9e-07 | 131 | 157 | 43 | 69 |
K-box 43 LesLslkeLqqLeqqLekslkkiRskK 69
+++L++ eL+ Le+++ ++l+ +++k
OBART08G21560.1 131 VNELNIAELRGLEEAMTNALTVVKNKL 157
799********************9875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 171 aa
Download sequence Send
to blast |
MEGGGRRRKR GKVELRRIED RTSRQVRFSK RRSGLFKKAY ELSVLCDAQV ALLVFSPAGR 60 LYEFASSTSS IDTIFGRYWD LLDTTIDLNI EARESRLRQK EHSDDPVPKI NHITQCCLIV 120 QVIISVLESN VNELNIAELR GLEEAMTNAL TVVKNKLMMK VASVLPQSEV S
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-17 | 10 | 78 | 3 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-17 | 10 | 78 | 3 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-17 | 10 | 78 | 3 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-17 | 10 | 78 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-17 | 10 | 78 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-17 | 10 | 78 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-17 | 10 | 78 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-17 | 10 | 78 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-17 | 10 | 78 | 3 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-17 | 10 | 78 | 3 | 69 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AK242980 | 1e-160 | AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence. |