PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G21540.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 458aa MW: 47059.5 Da PI: 6.5043

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G21540.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	46.6	8.8e-15	60	90	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 fh l+efDe+krsCr+rL++hn+rrrk+q+ OBART08G21540.1 60 GFHLLQEFDEAKRSCRKRLDGHNRRRRKPQP 90 6***************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF103612	3.73E-12	59	93	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	5.1E-4	59	75	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-7	59	87	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	10.879	61	88	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MEWDLKMPPA VSWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLKLGG 60 FHLLQEFDEA KRSCRKRLDG HNRRRRKPQP DPMNSASYLA SQQGARFSPF ATPRPEPSWT 120 GMIKTEDSPY YTHHQIPLGI SSRQQHFVGS TSDGGRRFPF LQEGEISFGT GAGAGGVPMD 180 QAAAAAAASV CQPLLKTVAP PPPPHGGGGS GGGKMFSDGG LTQVLDSDCA LSLLSAPANS 240 TAIDVGGGRM VIQPTEHMPM AQPLIPGLQI DGSNRSTATG SHWRHHRHLD GRVLLPVCQP 300 LLKTVAPPPP PHGGGGSGGG KMFSDGGLTQ VLDSDCALSL LSAPANSTAI DVGGGRVVVQ 360 PTEHIPMAQP LISGLQFGGG GGSSAWFAAR PHHQAATGAA ATAVVVSTAG FSCPVVESEQ 420 LNTVLSSNDN EMNYNGMFHV GGEGSSDGTS SSLPFSWQ

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MEWDLKMPPA VSWELADELE NSGGGGVPAA VSSSSAAVGG GVNAGGGGRQ ECSVDLKLGG  60
FHLLQEFDEA KRSCRKRLDG HNRRRRKPQP DPMNSASYLA SQQGARFSPF ATPRPEPSWT  120
GMIKTEDSPY YTHHQIPLGI SSRQQHFVGS TSDGGRRFPF LQEGEISFGT GAGAGGVPMD  180
QAAAAAAASV CQPLLKTVAP PPPPHGGGGS GGGKMFSDGG LTQVLDSDCA LSLLSAPANS  240
TAIDVGGGRM VIQPTEHMPM AQPLIPGLQI DGSNRSTATG SHWRHHRHLD GRVLLPVCQP  300
LLKTVAPPPP PHGGGGSGGG KMFSDGGLTQ VLDSDCALSL LSAPANSTAI DVGGGRVVVQ  360
PTEHIPMAQP LISGLQFGGG GGSSAWFAAR PHHQAATGAA ATAVVVSTAG FSCPVVESEQ  420
LNTVLSSNDN EMNYNGMFHV GGEGSSDGTS SSLPFSWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	87	KRSCRKRLDGHNRRRRKP

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109469	0.0	AK109469.1 Oryza sativa Japonica Group cDNA clone:001-128-D02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015649377.1	1e-118	squamosa promoter-binding-like protein 16
Swissprot	Q6YZE8	1e-119	SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBL	A0A0D3H2H9	0.0	A0A0D3H2H9_9ORYZ; Uncharacterized protein
STRING	OBART08G21540.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1755	37	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	8e-16	SBP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice. Theor. Appl. Genet., 2011. 122(8): p. 1489-96 [PMID:21327937] Wang S, et al. Control of grain size, shape and quality by OsSPL16 in rice. Nat. Genet., 2012. 44(8): p. 950-4 [PMID:22729225] Wang S, et al. The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality. Nat. Genet., 2015. 47(8): p. 949-54 [PMID:26147620] Wang Y, et al. A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.). Planta, 2016. 243(2): p. 459-71 [PMID:26474992] Lee CM, et al. Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters. Rice (N Y), 2015. 8(1): p. 33 [PMID:26519289] Bessho-Uehara K, et al. Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74 [PMID:27466405]