 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART08G20460.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LBD |
| Protein Properties |
Length: 174aa MW: 19376.8 Da PI: 4.9646 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART08G20460.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 121.1 | 6.2e-38 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp er +a++++++eA +r++dPvyG++g+i++lq++++ ++ el
OBART08G20460.1 20 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMAERGNAANTMAMEAYWRVQDPVYGCTGIINRLQEEIRAVQCEL 113
6********************************************************************************************* PP
DUF260 95 allkee 100
a+++++
OBART08G20460.1 114 ARTQAH 119
*99986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 174 aa
Download sequence Send
to blast |
MQDPEEDDDD QQQQHPAARR CAACRYLRRR CADDCVLAPF FPASRPHRYA CVHRVFGASN 60
VARLLQSLPM AERGNAANTM AMEAYWRVQD PVYGCTGIIN RLQEEIRAVQ CELARTQAHL 120
AIGVASSQQP PPPPPPPPLP SPPPPPQQQQ QQQEEQSPPP LLDPADEFLN LDGL
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012616 | 1e-171 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
