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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART08G19340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 648aa MW: 70652.3 Da PI: 7.9901 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.7 | 4.8e-33 | 250 | 306 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+se+prsYY+Ct+++C vkkkvers+ d++++ei+Y+g+Hnh+ OBART08G19340.1 250 EDGYNWRKYGQKQVKNSEHPRSYYKCTFTNCAVKKKVERSQ-DGQITEIVYKGSHNHP 306 8****************************************.***************7 PP | |||||||
2 | WRKY | 105.5 | 2.7e-33 | 461 | 519 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+vers++d k v++tYeg+Hnhe OBART08G19340.1 461 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERSSHDLKSVITTYEGKHNHE 519 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-29 | 245 | 308 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-26 | 247 | 308 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.3E-37 | 249 | 307 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.146 | 250 | 308 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-25 | 250 | 306 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-37 | 446 | 521 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-29 | 453 | 521 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.597 | 456 | 521 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-38 | 461 | 520 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-25 | 462 | 519 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 648 aa Download sequence Send to blast |
MSSFLNEEFS SGPFSDIFCD NGSNKHQDGL GKSKAFIDSS REETAQLAKK FESNLFGANQ 60 KSSSNGCLSE RMAARTGFGV LKIDTSRVGY STPIRSPVTI PPGVSPRELL ESPVFLPNAI 120 AQPSPTTGKL PFLMHSNVKP SIPKKTEDET RHDRVFFFQP IWDLSHQLVQ LQRSVNHQNQ 180 PSVTDNHQEL SLQSSSTAAK DFTSATIVKP KTSDSMLDND DHPSPANDQE ENATNKNEEY 240 SSDLIITPAE DGYNWRKYGQ KQVKNSEHPR SYYKCTFTNC AVKKKVERSQ DGQITEIVYK 300 GSHNHPLPPS NRRPNVPFSH FNDLRDDHSE KFGSKSGQAT ATSWENAANG HLQDVGSEVL 360 TKLSASLTTT EHAEKSVMDK QEAVDISSTL SNEEDDRVTH RAPLSLGFDA NDDDAEHKRR 420 KMDVYAATST STNAIDIGAV ASRAVREPRV VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN 480 PRSYYKCTHP GCSVRKHVER SSHDLKSVIT TYEGKHNHEV PAARNSGHPS SGSAAAPQAT 540 NGLLHRRPEP AQGGGGGSLA QFGYGSAGHR PAEQFGAAAA GFSFGMLPRS IATPAPSPAI 600 AVPAMQGYPG LVLPRGEMKV NLLPQSGNAG AAASQQLMGR LPKQHPQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 250 | 522 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 250 | 522 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065518 | 0.0 | AK065518.1 Oryza sativa Japonica Group cDNA clone:J013025I24, full insert sequence. | |||
GenBank | AY870610 | 0.0 | AY870610.1 Oryza sativa (japonica cultivar-group) WRKY30 mRNA, complete cds. | |||
GenBank | CT828868 | 0.0 | CT828868.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI209L14, full insert sequence. | |||
GenBank | CT828869 | 0.0 | CT828869.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI216M15, full insert sequence. | |||
GenBank | DQ298180 | 0.0 | DQ298180.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 30 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650158.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_015650159.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_015650160.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_015650162.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_015650163.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_015650164.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_015650165.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_025883130.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_025883131.1 | 0.0 | probable WRKY transcription factor 2 | ||||
TrEMBL | A0A0D3H1S5 | 0.0 | A0A0D3H1S5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G19340.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2075 | 38 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-113 | WRKY DNA-binding protein 2 |