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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART08G19210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NF-YC | ||||||||
Protein Properties | Length: 106aa MW: 11595.2 Da PI: 4.6875 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 121 | 5.1e-38 | 1 | 72 | 30 | 101 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 +kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fdflvdivprde OBART08G19210.1 1 MKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFLVDIVPRDEA 72 9*********************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 9.1E-15 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 6.2E-24 | 1 | 69 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 4.9E-30 | 1 | 69 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MKADEDVRMI AAEAPVVFAR ACEMFILELT HRGWAHAEEN KRRTLQKSDI AAAIARTEVF 60 DFLVDIVPRD EAKDAEAAAA VAAGIPHPAA GLPATDPMAY YYVQPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-39 | 1 | 69 | 27 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 47 | RRTLQKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288044 | 1e-175 | AB288044.1 Oryza sativa Japonica Group OsHAP5D gene for HAP5 subunit of HAP complex, complete cds. | |||
GenBank | AK108510 | 1e-175 | AK108510.1 Oryza sativa Japonica Group cDNA clone:002-144-A03, full insert sequence. | |||
GenBank | AP000364 | 1e-175 | AP000364.1 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0026F07. | |||
GenBank | AP005148 | 1e-175 | AP005148.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1142B04. | |||
GenBank | AP014964 | 1e-175 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-175 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. | |||
GenBank | CT828952 | 1e-175 | CT828952.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN028G23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015648381.1 | 7e-71 | nuclear transcription factor Y subunit C-6 | ||||
Swissprot | Q9XE33 | 6e-72 | NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A0D3H1Q8 | 4e-70 | A0A0D3H1Q8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0IDS0 | 2e-69 | A0A0E0IDS0_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2YWL9 | 2e-69 | A2YWL9_ORYSI; Uncharacterized protein | ||||
TrEMBL | A3BUG3 | 4e-70 | A3BUG3_ORYSJ; Uncharacterized protein | ||||
TrEMBL | I1QJT4 | 2e-69 | I1QJT4_ORYGL; Uncharacterized protein | ||||
STRING | OS08T0496500-01 | 3e-70 | (Oryza sativa) | ||||
STRING | ONIVA08G21210.1 | 3e-70 | (Oryza nivara) | ||||
STRING | ORGLA08G0168500.1 | 3e-70 | (Oryza glaberrima) | ||||
STRING | OBART08G19210.1 | 7e-71 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-40 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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