PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G19000.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 583aa    MW: 65957.9 Da    PI: 5.7974
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G19000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-06518544127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+ C+++ rtG+C+ Gd C +aH++
  OBART08G19000.1 518 PKTVMCPDWCRTGHCSSGDGCEYAHSQ 544
                      79***********************97 PP
2zf-CCCH32.31.6e-10556581126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y+te+Cr+++++  C+yGd+C++ H+
  OBART08G19000.1 556 YRTEPCRYWLAGKGCWYGDKCRYKHS 581
                      89*********99************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.94E-8517549IPR000571Zinc finger, CCCH-type
SMARTSM003560.011517544IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873517545IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-11519548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-9553582IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7554582IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7555582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868555583IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-8556581IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MKQEEDELAV DPGVGAVCDP VTKLRFEAIV CLLDRIPITL QQIDMFGQDV AFRTKRIGNI  60
EALLDFLKGS AAATWGARAG AGEPIDASSP ELHRLVEDAE TAYRDVRGLQ PRMVVQMPRV  120
FHKVCLPKLH QLLVIARRLL AQNVALRRLL LQEPVGCDVS PMALAEAAVS SDDFERHGRN  180
KVVIDEFGYE DLLRRRHTGH ESQNDADDAE QHGREVREGE YEGLILMRHR DTSHELLQDD  240
ARRRRADAEA EQQGGDGEVR DEYEDYLCRQ LGAVYSGPDQ IYEHDMRGPE PAHSPNTPDQ  300
IYVPCERMLP YPSNCDNAED RIHMACLALK NLVKDMEGIY SPRGTLWQYL EDVISLAHAL  360
FLENTKLHRF TDQASHQDLP LQPPQGFPFQ QQPQHDGYQQ PGVPFQQPQQ GGYYGHGQGI  420
MFQRGGYLQD VPFQHWQWQQ GGYGQGFMFP QAQHQGGYGQ GFLSEQPLPG DPSFMNMQAP  480
YDGDGGVLFQ KPQHYHHGHV PSEKGAIQAK GKQKMREPKT VMCPDWCRTG HCSSGDGCEY  540
AHSQDELRVI DAGPKYRTEP CRYWLAGKGC WYGDKCRYKH STD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046200.0AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02.
GenBankAP0047620.0AP004762.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686H11.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883283.10.0putative zinc finger CCCH domain-containing protein 57 isoform X2
SwissprotA3BUD20.0C3H57_ORYSJ; Putative zinc finger CCCH domain-containing protein 57
TrEMBLA0A0D3H1M90.0A0A0D3H1M9_9ORYZ; Uncharacterized protein
STRINGOBART08G19000.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2025277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-15C3H family protein