PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G18610.4

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 492aa MW: 54038.7 Da PI: 7.5571

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G18610.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	202	224	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F +s + Hi +H OBART08G18610.4 202 FECPVCNKTFEEQSRYFGHIGSH 224 89*****************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	9.693	27	100	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	1.14E-6	31	82	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.890.10	0.001	32	81	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	4.5E-5	37	80	IPR001739	Methyl-CpG DNA binding
SMART	SM00355	0.41	153	176	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	155	176	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.681	202	229	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.018	202	224	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	204	224	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MTTEEELMGF ISSLAGQWVN QRMRRKLVDA SFFGDHLPSG WRLQLGIERK DRKAWVNCFS 60 YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT 120 SMDSQSNLPV ASATFYSHSR DQDETVADDI NSYECQQCNL TFHGQSAYAH HLITFHKVSS 180 KRRKSNKVSK FGEPVIGKDG KFECPVCNKT FEEQSRYFGH IGSHAKYQGL TPEAFLQTFS 240 GKVGLSSSLQ VLVGSPQLNE KTTACEARSQ HHDCSTKHGG NSTREAQSTW TYRNNEMNCA 300 DRTVPRTVPQ PNDHEDCRVS GFAEATNFND QAGRHQGFRP FSFGTTNHCQ GQIIDHAVAA 360 SKHAEVNNSM KSRDVNLNSR LNTISFPIAT ANNETSTALN DVNRSCITGK GFSGSFSNND 420 GAASIVLPSS GLNNKISSSL GVADRSSIAA RSFNAGYVYE NGASEANNIG NKNNTMVYQT 480 SLAMRPLSPP FF

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MTTEEELMGF ISSLAGQWVN QRMRRKLVDA SFFGDHLPSG WRLQLGIERK DRKAWVNCFS  60
YVSPKGQSFA TCQEVSAYLM SLLGYPEFKT DNIEYGSTQQ HGLCADDGVN VLGVQHQIGT  120
SMDSQSNLPV ASATFYSHSR DQDETVADDI NSYECQQCNL TFHGQSAYAH HLITFHKVSS  180
KRRKSNKVSK FGEPVIGKDG KFECPVCNKT FEEQSRYFGH IGSHAKYQGL TPEAFLQTFS  240
GKVGLSSSLQ VLVGSPQLNE KTTACEARSQ HHDCSTKHGG NSTREAQSTW TYRNNEMNCA  300
DRTVPRTVPQ PNDHEDCRVS GFAEATNFND QAGRHQGFRP FSFGTTNHCQ GQIIDHAVAA  360
SKHAEVNNSM KSRDVNLNSR LNTISFPIAT ANNETSTALN DVNRSCITGK GFSGSFSNND  420
GAASIVLPSS GLNNKISSSL GVADRSSIAA RSFNAGYVYE NGASEANNIG NKNNTMVYQT  480
SLAMRPLSPP FF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068243	0.0	AK068243.1 Oryza sativa Japonica Group cDNA clone:J013149G12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650343.1	0.0	uncharacterized protein LOC4345879 isoform X2
TrEMBL	A0A0D3H1J1	0.0	A0A0D3H1J1_9ORYZ; Uncharacterized protein
STRING	OS08T0485600-01	0.0	(Oryza sativa)