PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G18610.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 817aa    MW: 88089.2 Da    PI: 7.8247
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G18610.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059296318123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp C+k+F  +s +  H  +H
  OBART08G18610.2 296 FECPVCNKTFEEQSRYFGHVGSH 318
                      89************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098210.023121194IPR001739Methyl-CpG DNA binding
SuperFamilySSF541715.89E-7125176IPR016177DNA-binding domain
Gene3DG3DSA:3.30.890.104.2E-4126175IPR001739Methyl-CpG DNA binding
PfamPF014291.9E-5131174IPR001739Methyl-CpG DNA binding
SMARTSM003550.41247270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280249270IPR007087Zinc finger, C2H2
SMARTSM003550.023296318IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328296323IPR007087Zinc finger, C2H2
PROSITE patternPS000280298318IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MQQRERYAVI FSGGGSPRAA VAVPPSRCRC RLLWRREPLG LAESVGEEGR PLPAPPSPDP  60
DQLTTNSKGV SVDLVSLSRL ADPYDAELGK RTAGMTTEEE LMGFISSLAG QWVSQRMRRK  120
LVDASFFGDH LPSGWRLQLG IKRKDRKAWV NCFSYVSPKG QSFATCQEVS AYLMSLLGYP  180
EFKTDNIEYG STQQHGLCAD DGVNVLGVQH QIGTSMDSQS NLPVASATFY SHSRDQDETV  240
ADDINSYECQ QCNLTFHGQS AYAHHLITFH KMGSKRRKIN KVGKFGEPVI GKDGKFECPV  300
CNKTFEEQSR YFGHVGSHAK YHGLTPEAFL QTLSGKVGND SFAGLSCSLQ DLVGSPQLNE  360
KTTASEARSQ HHNCSTKHGG NSTRGIDLFN SNCPANFNGH NQTWCRPDEI PPTTDAPSTW  420
TYRNNVTNCA DRTVPRTAPQ PNDHMDCRVS GFAEATNFND QAGRHQGFRP SSFGTTNHCQ  480
GQIIDHAVAA SKHAEVNNSM KSRDVNLNSR LNTISFPIAT ANNETSTALN DVNRSCITGK  540
GFSGSFSNND GAASIVLPSS GLNNKIPSSL GVADRSSIAA RSFNAGYVNE NGASEANNIG  600
NKNNTMVYQT SLAMRPVSPC DLQLGFSGQK QQILPGYGEL RPAASGSPQL GGMAANSSIP  660
TRPSQPQFGS MARTDALPTG PSQPGSLARP NFVPTGFSQF ASRPPTSVPP ADSSQFAGGM  720
ARQNIPTTSE PTLVLGYTPQ MVNGPPAQLG WDLSLSRMVS EGMLPVLCIW CNSQFHHFGP  780
IDAQHSGSFG FICPACKEKM SGNPNAPNNA LEPLAHP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0690970.0AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650380.10.0uncharacterized protein LOC4345880 isoform X1
TrEMBLA0A0D3H1I90.0A0A0D3H1I9_9ORYZ; Uncharacterized protein
STRINGOBART08G18610.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26871419