PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART08G18610.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 781aa MW: 84156 Da PI: 8.1357

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART08G18610.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00056	296	318	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F +s + H +H OBART08G18610.1 296 FECPVCNKTFEEQSRYFGHVGSH 318 89************999987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50982	10.023	121	194	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	5.56E-7	125	176	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.890.10	3.9E-4	126	175	IPR001739	Methyl-CpG DNA binding
Pfam	PF01429	1.8E-5	131	174	IPR001739	Methyl-CpG DNA binding
SMART	SM00355	0.41	247	270	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	249	270	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.023	296	318	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.328	296	323	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	298	318	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence Send to blast
MQQRERYAVI FSGGGSPRAA VAVPPSRCRC RLLWRREPLG LAESVGEEGR PLPAPPSPDP 60 DQLTTNSKGV SVDLVSLSRL ADPYDAELGK RTAGMTTEEE LMGFISSLAG QWVSQRMRRK 120 LVDASFFGDH LPSGWRLQLG IKRKDRKAWV NCFSYVSPKG QSFATCQEVS AYLMSLLGYP 180 EFKTDNIEYG STQQHGLCAD DGVNVLGVQH QIGTSMDSQS NLPVASATFY SHSRDQDETV 240 ADDINSYECQ QCNLTFHGQS AYAHHLITFH KMGSKRRKIN KVGKFGEPVI GKDGKFECPV 300 CNKTFEEQSR YFGHVGSHAK YHGLTPEAFL QTLSGKVGLS CSLQDLVGSP QLNEKTTASE 360 ARSQHHNCST KHGGNSTRDA PSTWTYRNNV TNCADRTVPR TAPQPNDHMD CRVSGFAEAT 420 NFNDQAGRHQ GFRPSSFGTT NHCQGQIIDH AVAASKHAEV NNSMKSRDVN LNSRLNTISF 480 PIATANNETS TALNDVNRSC ITGKGFSGSF SNNDGAASIV LPSSGLNNKI PSSLGVADRS 540 SIAARSFNAG YVNENGASEA NNIGNKNNTM VYQTSLAMRP VSPCDLQLGF SGQKQQILPG 600 YGELRPAASG SPQLGGMAAN SSIPTRPSQP QFGSMARTDA LPTGPSQPGS LARPNFVPTG 660 FSQFASRPPT SVPPADSSQF AGGMARQNIP TTSEPTLVLG YTPQMVNGPP AQLGWDLSLS 720 RMVSEGMLPV LCIWCNSQFH HFGPIDAQHS GSFGFICPAC KEKMSGNPNA PNNALEPLAH 780 P

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence Send to blast

MQQRERYAVI FSGGGSPRAA VAVPPSRCRC RLLWRREPLG LAESVGEEGR PLPAPPSPDP  60
DQLTTNSKGV SVDLVSLSRL ADPYDAELGK RTAGMTTEEE LMGFISSLAG QWVSQRMRRK  120
LVDASFFGDH LPSGWRLQLG IKRKDRKAWV NCFSYVSPKG QSFATCQEVS AYLMSLLGYP  180
EFKTDNIEYG STQQHGLCAD DGVNVLGVQH QIGTSMDSQS NLPVASATFY SHSRDQDETV  240
ADDINSYECQ QCNLTFHGQS AYAHHLITFH KMGSKRRKIN KVGKFGEPVI GKDGKFECPV  300
CNKTFEEQSR YFGHVGSHAK YHGLTPEAFL QTLSGKVGLS CSLQDLVGSP QLNEKTTASE  360
ARSQHHNCST KHGGNSTRDA PSTWTYRNNV TNCADRTVPR TAPQPNDHMD CRVSGFAEAT  420
NFNDQAGRHQ GFRPSSFGTT NHCQGQIIDH AVAASKHAEV NNSMKSRDVN LNSRLNTISF  480
PIATANNETS TALNDVNRSC ITGKGFSGSF SNNDGAASIV LPSSGLNNKI PSSLGVADRS  540
SIAARSFNAG YVNENGASEA NNIGNKNNTM VYQTSLAMRP VSPCDLQLGF SGQKQQILPG  600
YGELRPAASG SPQLGGMAAN SSIPTRPSQP QFGSMARTDA LPTGPSQPGS LARPNFVPTG  660
FSQFASRPPT SVPPADSSQF AGGMARQNIP TTSEPTLVLG YTPQMVNGPP AQLGWDLSLS  720
RMVSEGMLPV LCIWCNSQFH HFGPIDAQHS GSFGFICPAC KEKMSGNPNA PNNALEPLAH  780
P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068131	0.0	AK068131.1 Oryza sativa Japonica Group cDNA clone:J013130L03, full insert sequence.
GenBank	AK069097	0.0	AK069097.1 Oryza sativa Japonica Group cDNA clone:J023004M17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015650381.1	0.0	uncharacterized protein LOC4345880 isoform X2
TrEMBL	A0A0D3H1I8	0.0	A0A0D3H1I8_9ORYZ; Uncharacterized protein
STRING	OBART08G18610.2	0.0	(Oryza barthii)