PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G18480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 220aa    MW: 23895 Da    PI: 7.0239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G18480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.2e-13249454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++Y+k++
  OBART08G18480.1  2 THIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKEM 49
                     8**************************...9*****************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.92E-12154No hitNo description
PROSITE profilePS5088814.691149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-15166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-13264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-10249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTHIAVERNR RKQMNEYLAV LRSLMPASYV QRGDQASIIG GAINYVKEME QLLQSLEAHR  60
HARRARTDAA AALPFAGFFT FPQYSMSAVP TTTTTTVAAA ATENGNAVAG DDADADASGS  120
KPSSVADIEV TMVESHANLK VLSRRRPRQL LRMVGGLQHH RLAVLHLNVA SAGHMALYSL  180
SLKVEDDCQL TSVDDIAAAV HGIVETIEQE QQQQQKQSCS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076260.0AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649413.11e-109transcription factor bHLH96
SwissprotQ9C7T42e-66BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D3H1H41e-161A0A0D3H1H4_9ORYZ; Uncharacterized protein
TrEMBLI1QJK31e-159I1QJK3_ORYGL; Uncharacterized protein
STRINGORGLA08G0160400.11e-160(Oryza glaberrima)
STRINGOBART08G18480.11e-162(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]