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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART08G18480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 23895 Da PI: 7.0239 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8.2e-13 | 2 | 49 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++Y+k++ OBART08G18480.1 2 THIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKEM 49 8**************************...9*****************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.92E-12 | 1 | 54 | No hit | No description |
PROSITE profile | PS50888 | 14.691 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.07E-15 | 1 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-13 | 2 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.8E-10 | 2 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-10 | 4 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MTHIAVERNR RKQMNEYLAV LRSLMPASYV QRGDQASIIG GAINYVKEME QLLQSLEAHR 60 HARRARTDAA AALPFAGFFT FPQYSMSAVP TTTTTTVAAA ATENGNAVAG DDADADASGS 120 KPSSVADIEV TMVESHANLK VLSRRRPRQL LRMVGGLQHH RLAVLHLNVA SAGHMALYSL 180 SLKVEDDCQL TSVDDIAAAV HGIVETIEQE QQQQQKQSCS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107626 | 0.0 | AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649413.1 | 1e-109 | transcription factor bHLH96 | ||||
Swissprot | Q9C7T4 | 2e-66 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A0D3H1H4 | 1e-161 | A0A0D3H1H4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1QJK3 | 1e-159 | I1QJK3_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA08G0160400.1 | 1e-160 | (Oryza glaberrima) | ||||
STRING | OBART08G18480.1 | 1e-162 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 8e-61 | bHLH family protein |
Publications ? help Back to Top | |||
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