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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART08G13340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 253aa MW: 26674.7 Da PI: 6.1427 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 77.3 | 1.7e-24 | 130 | 184 | 2 | 53 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEE CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYe 53 dDg++WrKYGqK++ g+++pr+YYrCt++ gC+++k+v+r+++d ++++++Y OBART08G13340.1 130 DDGHSWRKYGQKDILGAKHPRGYYRCTHRntqGCTATKQVQRTDDDASLFDVVYV 184 8***************************98889*********************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 20.817 | 124 | 192 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.7E-24 | 124 | 185 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-22 | 128 | 185 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-31 | 129 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-23 | 130 | 184 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEGVVDGSGA QLVVAELVRV QGLLRQLEAH LSAPCSVELC RGLAAQIVAL TDRSIGIATR 60 SFSSASGGGA HFADTAPPMP ALTSCTPSPL SDGSDHQPFR TTNAKKRKTT ARWTSQVRVS 120 AAGGAEGPAD DGHSWRKYGQ KDILGAKHPR GYYRCTHRNT QGCTATKQVQ RTDDDASLFD 180 VVYVASDSYG LGGAGYGDWR CCDGDLQEVV SALATVTSAP DHAAMDAADF MSYCFDFDPA 240 VYGGIVGTPS FFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-19 | 130 | 188 | 9 | 67 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111606 | 0.0 | AK111606.1 Oryza sativa Japonica Group cDNA clone:J013102P22, full insert sequence. | |||
GenBank | AY676931 | 0.0 | AY676931.1 Oryza sativa (indica cultivar-group) transcription factor WRKY69 (WRKY69) mRNA, complete cds. | |||
GenBank | HQ858835 | 0.0 | HQ858835.1 Oryza sativa Japonica Group isolate UT1345 WRKY transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651040.1 | 1e-129 | probable WRKY transcription factor 54 | ||||
TrEMBL | A0A0D3GZT7 | 0.0 | A0A0D3GZT7_9ORYZ; Uncharacterized protein | ||||
STRING | OBART08G13340.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23810.1 | 3e-23 | WRKY family protein |