 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART08G13190.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
NF-YB |
| Protein Properties |
Length: 328aa MW: 36204.2 Da PI: 8.173 |
| Description |
NF-YB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART08G13190.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YB | 54.6 | 2.6e-17 | 18 | 79 | 26 | 87 |
NF-YB 26 kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
k+++da++++ ec +efi +++se+++ c re++kti+++ +l al +lGf +y+e++++
OBART08G13190.1 18 KLARDAQDLLVECCVEFINLLSSESNEVCSREDKKTIAPEHVLRALQDLGFREYIEEVQAAY 79
89******************************************************998654 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MDPMDIVGKS KEDVSLPKLA RDAQDLLVEC CVEFINLLSS ESNEVCSRED KKTIAPEHVL 60
RALQDLGFRE YIEEVQAAYE HHKHDTLDSP KASKFTGVEM TEEQAVAEQQ RMSQNLKRSS 120
KHNSYHSLSC TLNHSNPCSL NFSSIHNHNN SPHSCFLSNS CCILNRSKLR SLNFRSTLNH 180
SSPHSCNRNL SSTSNHSCPH NCSRNLSSPH NRSSPHSCSL NFSSILNHNN SPHSCSRNLS 240
SISNRSCSRS RRQSCNHSHN RKQNMAWTGP IRSQISLGLN PSTLAIQSPL PPSLSSLELE 300
ESGAVPATSG LSFLSHATAA LGRTGHCA
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF464902 | 1e-167 | AF464902.1 Oryza sativa repressor protein (Dr1) mRNA, complete cds. |
| GenBank | AK061580 | 1e-167 | AK061580.1 Oryza sativa Japonica Group cDNA clone:006-311-H08, full insert sequence. |
| GenBank | AP005795 | 1e-167 | AP005795.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1090H08. |
| GenBank | AP014964 | 1e-167 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CT830130 | 1e-167 | CT830130.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA058B22, full insert sequence. |
