PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G09450.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 790aa    MW: 87191.8 Da    PI: 8.2476
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G09450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-1963118257
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      r+ + +t +q e+L+++F+++++p++++ ++LAk+l++te+q+k+WFqN R+k+kk
  OBART08G09450.1  63 RRYQLLTMQQKETLNRAFQSCPNPDRNDLKKLAKELNMTETQIKYWFQNCRTKMKK 118
                      6677899************************************************8 PP
2START96.26e-3127850225204
                      E...............EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT...... CS
            START  25 s...............esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg...... 88 
                                      es+n++e+l k  +  +     +++ + r++++v + +++lv++lld + +W e ++    +a t++ is+g      
  OBART08G09450.1 278 KengllwlphmdilgvESLNYQEYLAKSRTI-GqkpvdFKVVVTRDTAIVNGSCVDLVKSLLDAN-RWRELFPgivaSANTTKIISTGpsnlhd 369
                      3333333344477777999999999998553.3479999**************************.******99999***************** PP

                      EEEE....EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..........-TTSEE...-EESSEEEEEEEECTCEEEEE CS
            START  89 galq....lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.........sssvvR...aellpSgiliepksnghskvt 165
                      g lq    +m aelq++sp vp  d++f+R++ q g g w +vdvS+d   + ++         ss  +R   ++llpSg++ie+++ng+skvt
  OBART08G09450.1 370 GLLQlknlQMRAELQVMSPEVPvCDVTFLRQSVQFGSGLWCVVDVSIDTILPGESktaqssvqtSSTAARrmeVRLLPSGCVIEEMENGYSKVT 463
                      655522226899***********************************97666655543222333222233445999****************** PP

                      EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
            START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                      w+ h+ +++r ++ l++sl++s  a ga +wva lqr+ 
  OBART08G09450.1 464 WMVHAAYDERAVPVLYHSLLRSAKALGACRWVASLQRHS 502
                      *************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-1549101IPR009057Homeodomain-like
SuperFamilySSF466898.77E-1851120IPR009057Homeodomain-like
PROSITE profilePS5007115.74259119IPR001356Homeobox domain
SMARTSM003891.9E-1761123IPR001356Homeobox domain
CDDcd000865.46E-1862118No hitNo description
PfamPF000464.1E-1763118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-4102144IPR009057Homeodomain-like
PROSITE profilePS5084824.236245507IPR002913START domain
CDDcd088751.86E-89249503No hitNo description
SuperFamilySSF559616.32E-18249502No hitNo description
SMARTSM002345.9E-8254504IPR002913START domain
PfamPF018525.3E-24294502IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MDGELKLMAS YVSKLKFILQ KDQQQEPHTA NLLVLLGSSN QDKRNGLSQG ENRMDTCTRK  60
KPRRYQLLTM QQKETLNRAF QSCPNPDRND LKKLAKELNM TETQIKYWFQ NCRTKMKKFK  120
NNEERKLLQK ENEELKKENA ELRHRMKNST CRACDLPLFH IDCRHWENPM LNKGNHGVTS  180
NLIPQAVSSL LPSSSGFVAS GSNLSSNAVL MPVSAMPSSV LQPAPAVSGA NFPILHNLSA  240
NANDGYTEKN VLLDLANRAM EEFFSLMKEN ESLLVKKKEN GLLWLPHMDI LGVESLNYQE  300
YLAKSRTIGQ KPVDFKVVVT RDTAIVNGSC VDLVKSLLDA NRWRELFPGI VASANTTKII  360
STGPSNLHDG LLQLKNLQMR AELQVMSPEV PVCDVTFLRQ SVQFGSGLWC VVDVSIDTIL  420
PGESKTAQSS VQTSSTAARR MEVRLLPSGC VIEEMENGYS KVTWMVHAAY DERAVPVLYH  480
SLLRSAKALG ACRWVASLQR HSQFLSGLHK YIFCPDSTMT EVVMRRKVLY LVKQMTSSFT  540
GLFASMSKAT LQDGDDTHFA HQIVGGAAGE PAGLLLSATT TIWLPGVNPR RVYDHLRDEQ  600
CHGEWRCLLG EQLHQGNALP YGAPLNGETV PEFYRMVNGL HEGHTISLIS PREMGGNISN  660
TLLLQEARTD LSGSLIVYAR TDVNTVHSIM NSGLNPATVF LVSSGCAILP DCLESFPLHP  720
AATADQAGTS SAAIASRSET GGSFVTVTYQ MFFSSQGGAA PASSSIHQGR DALKKATDIF  780
KVVLDTLTVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004410.0AK100441.1 Oryza sativa Japonica Group cDNA clone:J023089M04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650915.10.0homeobox-leucine zipper protein ROC6-like isoform X1
RefseqXP_015650916.10.0homeobox-leucine zipper protein ROC6-like isoform X1
TrEMBLA0A0D3GYK50.0A0A0D3GYK5_9ORYZ; Uncharacterized protein
STRINGOBART08G09450.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169781212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.16e-83protodermal factor 2