PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G05070.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 692aa    MW: 74365.8 Da    PI: 5.6317
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G05070.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-0976112137
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkkl 37 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++l
  OBART08G05070.2  76 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSREL 112
                      688999*****************************98 PP
2START209.81.1e-652394591206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela +a++elv++a+++ep+W++ss      ++++e+ + f+++ +      ++ea+r  +vv+m++ +lve+l+d++ q+ + +     +a+t
  OBART08G05070.2 239 ELAVAAMDELVQMAQLDEPLWSSSSepaaALLDEEEYARMFPRGLGpkqygLKSEASRHGAVVIMTHSNLVEILMDVN-QFATVFSsivsRAST 331
                      57899********************99999999********99888999*****************************.88888888888**** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      +ev+s+g      galq+m++e+q++splvp R+++fvRy++  ++g+w++vdvS+ds ++ p    v +++++pSg+li++++ng+skvtwve
  OBART08G05070.2 332 HEVLSTGvagnynGALQVMSMEFQVPSPLVPtRESYFVRYCKNNSDGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMPNGYSKVTWVE 421
                      *************************************************************98....7************************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      hv+++++++h+++++lv+sgla+gak+wv tl+rqce+
  OBART08G05070.2 422 HVEVDDSSVHNIYKPLVNSGLAFGAKRWVGTLDRQCER 459
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-763112IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-1164112IPR009057Homeodomain-like
CDDcd000863.58E-875112No hitNo description
PfamPF000462.7E-776112IPR001356Homeobox domain
PROSITE profilePS5084840.408230462IPR002913START domain
SuperFamilySSF559611.18E-34231461No hitNo description
CDDcd088757.80E-124234458No hitNo description
SMARTSM002341.9E-61239459IPR002913START domain
PfamPF018522.2E-54240459IPR002913START domain
Gene3DG3DSA:3.30.530.204.8E-6305458IPR023393START-like domain
SuperFamilySSF559611.88E-16481682No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MLDSHHLQQA LQQQYFDQIP VTTTAAADSG DNMLHGRADA GGLVDEFESK SCSENVDGAG  60
DGLSGDDQDP NQRPRKKRYH RHTQHQIQEM EAFFKECPHP DDKQRKELSR ELEPAREARE  120
RAAAGGERQA ARGEHAIQGG PEQRVVPQLR RPRRPRRDNA RLRDEIDRIS GIAAKHVGKP  180
PIVSFPVLSS PLAVAAARSP LDLAGAYGVV TPGLDMFGGA GDLLRGVHPL DADKPMIVEL  240
AVAAMDELVQ MAQLDEPLWS SSSEPAAALL DEEEYARMFP RGLGPKQYGL KSEASRHGAV  300
VIMTHSNLVE ILMDVNQFAT VFSSIVSRAS THEVLSTGVA GNYNGALQVM SMEFQVPSPL  360
VPTRESYFVR YCKNNSDGTW AVVDVSLDSL RPSPVLKCRR RPSGCLIQEM PNGYSKVTWV  420
EHVEVDDSSV HNIYKPLVNS GLAFGAKRWV GTLDRQCERL ASAMASNIPN GDLGVITSVE  480
GRKSMLKLAE RMVASFCGGV TASVAHQWTT LSGSGAEDVR VMTRKSVDDP GRPPGIVLNA  540
ATSFWLPVPP AAVFDFLRDE TSRSESANSN QSNMLILQES CTDASGSYVV YAPVDIVAMN  600
VVLNGGDPDY VALLPSGFAI LPDGPSGNAQ AAVGENGSGS GGGSLLTVAF QILVDSVPTA  660
KLSLGSVATV NSLIACTVER IKAAVCRDSN PQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1204960.0AK120496.1 Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650023.10.0homeobox-leucine zipper protein ROC1 isoform X2
SwissprotQ6ZAR00.0ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
TrEMBLA0A0D3GX200.0A0A0D3GX20_9ORYZ; Uncharacterized protein
STRINGOBART08G05070.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  2. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  3. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  4. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]