PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART08G04820.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 483aa    MW: 49590.9 Da    PI: 7.0852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART08G04820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000563774052154
                      HHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  21 eeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        L++l+ +      +K + a++L +++eYIk L
  OBART08G04820.1 377 TALQQLVSPF-----GKTDTASVLHETIEYIKFL 405
                      5566666665.....89***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.194356405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-10367425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-7368427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-4368409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MADHQEMIHA AAAPAMYGGG GAAAGGATTT TGSHGGGGGD WWSAAVSSCS APAPETMQGF  60
GGWSAAVVAV DGGGNTSRSA AGNTASSESP GSLATGSSIT FQEPAGGGVA DPAAIAVHAQ  120
TVAGGGGGGW NQQPFLDGSG FHGYMSSSRN DHHTNHHHHQ INTPSLMSNS SSNNGVMLQE  180
HQHDQNYQFL SNLGFELLSS PTSPYGGGGG FRSSLLRSLT EPAAAAKPND SPGFQQYHHH  240
QPAMNLQPPA AAAGREPLQF TNSTAAPFWN PSSGFTVAAE GTALGGAGAS PAQPTPASLA  300
AKRALEGVGD SSSIITKKAK ADSTPLKKSR TGTPSPLPTT FKACVYIYII FNLSQMVIDF  360
LPIKFHVRKE KLGDRVTALQ QLVSPFGKTD TASVLHETIE YIKFLHDQVG ALSAPYLKNR  420
QQVPHLKNST GVDNDGGGGG EGTAASKRDL TGRGLCLVPI SSTFAVASET PVDFWTPFGA  480
AFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648821.10.0transcription factor bHLH112 isoform X2
TrEMBLA0A0D3GWZ00.0A0A0D3GWZ0_9ORYZ; Uncharacterized protein
STRINGOBART08G04820.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-38bHLH family protein