 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART08G03930.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
LBD |
| Protein Properties |
Length: 129aa MW: 13873.9 Da PI: 9.8896 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART08G03930.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 101.8 | 6.4e-32 | 14 | 115 | 1 | 96 |
DUF260 1 aCaaCkvlrr.kCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.....edamsslvyeAearardPvyGavgvilklqqqle 88
aCaaC++++ +C+++C lapyfpa++pk+f++++ +FG++++l + +a ++ r + m+++vy A+ar++dP+ Ga+g i+klqqql+
OBART08G03930.1 14 ACAACAHQGAsSCPPNCGLAPYFPADKPKRFWYARLMFGMERILGFSEAEKQGIRpngstVISMAAVVYLADARVEDPILGAYGRIRKLQQQLD 107
7********999************************************976555666666899******************************* PP
DUF260 89 qlkaelal 96
+lkae a+
OBART08G03930.1 108 RLKAERAR 115
****9876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 129 aa
Download sequence Send
to blast |
MASPSPPTTT TQQACAACAH QGASSCPPNC GLAPYFPADK PKRFWYARLM FGMERILGFS 60
EAEKQGIRPN GSTVISMAAV VYLADARVED PILGAYGRIR KLQQQLDRLK AERARHSPAP 120
SGNGKPSPS
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK107012 | 1e-152 | AK107012.1 Oryza sativa Japonica Group cDNA clone:002-120-F04, full insert sequence. |
| GenBank | AP005605 | 1e-152 | AP005605.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1449_C01. |
| GenBank | AP005847 | 1e-152 | AP005847.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ9990_A01. |
| GenBank | AP014964 | 1e-152 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
