 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART07G26940.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bZIP |
| Protein Properties |
Length: 318aa MW: 34615.7 Da PI: 5.6178 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART07G26940.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 31.3 | 4.6e-10 | 50 | 89 | 5 | 44 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
k rr+++NReAAr+sR+RKka++++Le +L + ++
OBART07G26940.1 50 KTMRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 89
7789************************855444444444 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MADASSRTDT SIVVDNDDKN HQLENGHSGA VMASNSSDRS DRSDKLMDQK TMRRLAQNRE 60
AARKSRLRKK AYVQQLESSK LKLAQLEQEL QKARQQGIFI SSSGDQTHAM SGNGALTFDL 120
EYTRWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEVFKVKGVA AKADVFHILS 180
GMWKTPAERC FLWLGGFRPS ELLKLLANHL EPLTEQQLLG LNNLQESSQQ AEDALSQGME 240
ALQQSLADTL AGSLGSSGSS GNVANYMGQM AMAMGGQPAT ADIASNATNS DDPASLAGSS 300
CHTRLLFTLA CFEFAVAC
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB051295 | 0.0 | AB051295.1 Oryza sativa OsNIF2 mRNA for bZIP transcription factor, complete cds. |
| GenBank | AK100440 | 0.0 | AK100440.1 Oryza sativa Japonica Group cDNA clone:J023089F16, full insert sequence. |
| GenBank | CT831186 | 0.0 | CT831186.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA117D18, full insert sequence. |
| GenBank | HQ858807 | 0.0 | HQ858807.1 Oryza sativa Japonica Group isolate UT1185 bZIP transcription factor mRNA, partial cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Yilmaz A, et al.
GRASSIUS: a platform for comparative regulatory genomics across the grasses.
Plant Physiol., 2009. 149(1): p. 171-80
[PMID:18987217] - Chern M, et al.
A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
Plant Methods, 2012. 8(1): p. 6
[PMID:22353606] - Chern M, et al.
Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
BMC Genomics, 2014. 15: p. 461
[PMID:24919709] - Chern M, et al.
A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity.
PLoS Genet., 2016. 12(5): p. e1006049
[PMID:27176732]
|
