PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 317aa MW: 35146.5 Da PI: 7.1247

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART07G23790.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.9	2.2e-35	39	131	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg k+ll OBART07G23790.1 39 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLA 123 9**************************************************************999.........************* PP XXXXXXXX CS HSF_DNA-bind 96 kikrkkse 103 +i+r+ks+ OBART07G23790.1 124 EIHRRKSS 131 ***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	5.1E-58	35	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.3E-37	36	128	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.96E-33	36	128	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.8E-31	39	128	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-19	39	62	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-19	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	78	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-19	90	102	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008356	Biological Process	asymmetric cell division
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAFLVERCGE MVVSMEMGPH GGVGGGGGAA AGKPVPAPFL TKTYQLVDDP CTDHIVSWGE 60 DDTTFVVWRP PEFARDLLPN YFKHNNFSSF VRQLNTYGFR KIVADRWEFA NEFFRKGAKH 120 LLAEIHRRKS SQPPPPPMPH QPYHHHHHHH HLNPFSLPPP PPAYHHHHLI QEEPATTAHC 180 TVAGDGGEGG DFLAALSEDN RQLRRRNSLL LSELAHMKKL YNDIIYFLQN HVAPVTTTTT 240 TPSSTAMAAA QHHLPAAASC RLMELDSPEH SPPPPPPKTP ATDGGDTVKL FGVSLHGRKK 300 RAHRDDDDGV HDQGSEV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-22	26	128	17	129	Heat shock factor protein 1
5d5v_B	1e-22	26	128	17	129	Heat shock factor protein 1
5d5v_D	1e-22	26	128	17	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00187	DAP	Transfer from AT1G46264	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK063952	0.0	AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBank	AY344494	0.0	AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015645691.1	1e-178	heat stress transcription factor B-4b
Swissprot	Q7XHZ0	1e-179	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	A0A0D3GU36	0.0	A0A0D3GU36_9ORYZ; Uncharacterized protein
STRING	OBART07G23790.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-64	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]