PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OBART07G22470.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 1108aa MW: 124948 Da PI: 7.0007

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART07G22470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	46.1	8.3e-15	21	73	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ ++ q++ Le+++ + +yp+ e+++e A+++gLt +qV++WF+ rR ke++ OBART07G22470.1 21 TKKSPLQIQMLERFYSEVQYPQSEDIAEYATSVGLTYNQVRIWFKERRRKERR 73 567899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-14	13	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.013	14	74	IPR001356	Homeobox domain
SMART	SM00389	2.0E-14	16	78	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.21E-13	16	78	IPR009057	Homeodomain-like
Pfam	PF00046	3.9E-12	21	73	IPR001356	Homeobox domain
CDD	cd00086	1.31E-8	21	64	No hit	No description
Pfam	PF15612	1.9E-5	601	632	IPR028942	WHIM1 domain
Pfam	PF15613	7.0E-11	724	795	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1108 aa Download sequence Send to blast
MAAVRKMAAN GLAAKRENTG TKKSPLQIQM LERFYSEVQY PQSEDIAEYA TSVGLTYNQV 60 RIWFKERRRK ERRETESLGA HMEKQLSARS NGFRCSSSRS SSFSRSTMYR TVNLQAEDDR 120 YVDKGMSFTG EKHTLRSQVL FPKDYILRKV FRKDGPPLGS EFDPLPHSAP GHLRDTIDDH 180 FYQNQRVIKK RKIVEPTTQR SSLPCGNNGP VRKHGAGKGL MTVWHAMYSH SSKIQDGSNF 240 IDETGCLRSL RPLDDCGRIE DCDDGKLIQV PSSRVTDPKK HPPMECHLSV DESQSPVLQA 300 NQVTLVDDEE LELRELQAGP NPLRCSAHLS SSGRHGCPLC KDLLSRFPPS SVKMKQPFST 360 RPWGSSPEMV KKLFQVVRFI YNRFGYMDVH PFTLDELAQA FHDKVREQEF DMNFWIKSLN 420 SLTWVEILRQ VLVASGFGSK HHMLNRDFFN KEKNQMVKYG LRPRTLKGEL FALLSKKGSG 480 GLKVSELAKS PEIVDLSISS TEIEQLIYST LSSDITLFEK IAPSAYRLRV DPRIKGKEDS 540 GSDTEDSGSV DDHSDASSGA DESDGSHEMS FSEHEHRILR RKRKNGHENV NRCSEIDESY 600 SGERWLLGLM EGEYSDLSID EKLDCLVALM DVVSGADSAP RLEEPSRVVP SIPRAQPHVS 660 GGKIKKSTRN ICQSSDECFN ASGSMYGLDS SMHEQSRSLR SRDYVAYSGR NDTSTGVAHQ 720 PQVVLLGSDR RYNNYWLFLG PCSADDPGHR RVYFESSEDG HWEVIDSPQE LLSLLASLDS 780 RGTREAYLLA SMKKRETCLF EAMKKHYENR DAVQPAMPSD TSHSETSSGD GASPKLSSGD 840 GASPTSDIDN ASVPTNPAEN MINASSAIAI EVGRRGDEKI LKWERSQTFD KWIWTSFYSC 900 LTAVKCGKKS FKESLVRCES CHDLYWRDEK HCRICHSTFE VSFDLEERYA IHVATCRDPE 960 DAYDVPNHKV LPSQLQALKA AIHAIEAHMP EAAFAGLWMK SSHKLWVKRL RRTSSLAELL 1020 QVLVDFVGAM DEDWLYKSSS SVSFCSYLDD IVIYFQTMPQ TTSAVALWVV KLDALITPYL 1080 ERADSDRALG EESVQTRTRA CGEIARNR

Sequence ? help Back to Top

Protein Sequence Length: 1108 aa Download sequence Send to blast

MAAVRKMAAN GLAAKRENTG TKKSPLQIQM LERFYSEVQY PQSEDIAEYA TSVGLTYNQV  60
RIWFKERRRK ERRETESLGA HMEKQLSARS NGFRCSSSRS SSFSRSTMYR TVNLQAEDDR  120
YVDKGMSFTG EKHTLRSQVL FPKDYILRKV FRKDGPPLGS EFDPLPHSAP GHLRDTIDDH  180
FYQNQRVIKK RKIVEPTTQR SSLPCGNNGP VRKHGAGKGL MTVWHAMYSH SSKIQDGSNF  240
IDETGCLRSL RPLDDCGRIE DCDDGKLIQV PSSRVTDPKK HPPMECHLSV DESQSPVLQA  300
NQVTLVDDEE LELRELQAGP NPLRCSAHLS SSGRHGCPLC KDLLSRFPPS SVKMKQPFST  360
RPWGSSPEMV KKLFQVVRFI YNRFGYMDVH PFTLDELAQA FHDKVREQEF DMNFWIKSLN  420
SLTWVEILRQ VLVASGFGSK HHMLNRDFFN KEKNQMVKYG LRPRTLKGEL FALLSKKGSG  480
GLKVSELAKS PEIVDLSISS TEIEQLIYST LSSDITLFEK IAPSAYRLRV DPRIKGKEDS  540
GSDTEDSGSV DDHSDASSGA DESDGSHEMS FSEHEHRILR RKRKNGHENV NRCSEIDESY  600
SGERWLLGLM EGEYSDLSID EKLDCLVALM DVVSGADSAP RLEEPSRVVP SIPRAQPHVS  660
GGKIKKSTRN ICQSSDECFN ASGSMYGLDS SMHEQSRSLR SRDYVAYSGR NDTSTGVAHQ  720
PQVVLLGSDR RYNNYWLFLG PCSADDPGHR RVYFESSEDG HWEVIDSPQE LLSLLASLDS  780
RGTREAYLLA SMKKRETCLF EAMKKHYENR DAVQPAMPSD TSHSETSSGD GASPKLSSGD  840
GASPTSDIDN ASVPTNPAEN MINASSAIAI EVGRRGDEKI LKWERSQTFD KWIWTSFYSC  900
LTAVKCGKKS FKESLVRCES CHDLYWRDEK HCRICHSTFE VSFDLEERYA IHVATCRDPE  960
DAYDVPNHKV LPSQLQALKA AIHAIEAHMP EAAFAGLWMK SSHKLWVKRL RRTSSLAELL  1020
QVLVDFVGAM DEDWLYKSSS SVSFCSYLDD IVIYFQTMPQ TTSAVALWVV KLDALITPYL  1080
ERADSDRALG EESVQTRTRA CGEIARNR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	73	RRRKERRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646956.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A0D3GTM7	0.0	A0A0D3GTM7_9ORYZ; Uncharacterized protein
STRING	OBART07G22470.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-143	Homeodomain-like transcriptional regulator