PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G21080.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 340aa    MW: 35774.4 Da    PI: 7.7355
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G21080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.8e-0692112323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C  Cgk Fs++ +L  H+r+H
  OBART07G21080.1  92 CRECGKLFSSWRSLFGHMRRH 112
                      ********************9 PP
2zf-C2H214.88.2e-05211233123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp Cgk+F +   L  H  +H
  OBART07G21080.1 211 YECPGCGKVFASYQALGGHRASH 233
                      99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.3E-51336IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.36E-101335No hitNo description
PfamPF139122.6E-51335IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4081335IPR007087Zinc finger, C2H2
SMARTSM003550.111335IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576674.36E-1085112No hitNo description
PROSITE profilePS5015710.1890113IPR007087Zinc finger, C2H2
SMARTSM003550.01490112IPR015880Zinc finger, C2H2-like
PfamPF139127.2E-591112IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-492112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576676.86E-5208235No hitNo description
PfamPF139121.8E-11210235IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45211238IPR007087Zinc finger, C2H2
SMARTSM003550.05211233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDAGGVELSG VMHRCRVCGK GFSCGRSLGG HMRSHISFGE AAAELGANGG VVGYGLRENP  60
KKTRRLSEFD GDGDGEEVEV EEGGDGGELR ACRECGKLFS SWRSLFGHMR RHASGGGGRN  120
HDDDDDDDAE TFEKPEQKKK KATAKQPPPL PLPRNGYGYG YNSDEDSALL QYGGDVAKSR  180
KRRASYHSPN SISSKKKQQP RAAAPAKRTR YECPGCGKVF ASYQALGGHR ASHKRINTSC  240
SAPKVSPATA AAAAPAPEPS SETYASLSTL SPSASPGSAA AGIGDRKANN KSSAEEEKFG  300
GACSSDELYA ELELEQRSPA AAAGFLDLNF PPASSEVGVN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038400.0AP003840.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1634_B10.
GenBankAP0039150.0AP003915.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1579_C03.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646241.11e-144uncharacterized protein LOC107278250
TrEMBLA0A0D3GT540.0A0A0D3GT54_9ORYZ; Uncharacterized protein
STRINGOBART07G21080.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-12C2H2-like zinc finger protein