PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

OBART07G20600.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 226aa MW: 23126.1 Da PI: 7.933

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART07G20600.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.5	2e-28	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r ++++sl+yeA r+ +Pv Gavg+++ ++++l+q OBART07G20600.1 2 SCNGCRVLRKGCSEGCVLRPCLqwidgAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRAAVFQSLLYEAAGRTINPVGGAVGLLSGGSWHLCQ 95 6*******************9999888999************************************************************ PP DUF260 90 lkaelal 96 ++++++l OBART07G20600.1 96 AAVDTVL 102 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.296	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSCNGCRVLR KGCSEGCVLR PCLQWIDGAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR 60 AAVFQSLLYE AAGRTINPVG GAVGLLSGGS WHLCQAAVDT VLRGGGIQPL PDQVDAAAAG 120 GRDVFASTAR RAVGGCSTFS TAKRSTTTTT TKNPGTPHDA AAAAPQPEPS CDLGLWLSPG 180 SPPAPGDRRS GGRRADTPSM NSEGSVTTCG VVGGGEREPE LLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069813	0.0	AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015647207.1	1e-161	LOB domain-containing protein 37
Swissprot	Q9FN11	5e-67	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A0D3GT01	1e-161	A0A0D3GT01_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0AM30	1e-161	A0A0E0AM30_9ORYZ; Uncharacterized protein
TrEMBL	I1QBT5	1e-161	I1QBT5_ORYGL; Uncharacterized protein
STRING	OGLUM07G20380.1	1e-162	(Oryza glumipatula)
STRING	ORGLA07G0157700.1	1e-162	(Oryza glaberrima)
STRING	OBART07G20600.1	1e-162	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-57	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]