PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G20580.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 322aa    MW: 34709.5 Da    PI: 7.3659
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G20580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0018239261123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C   F++   L  H+r+H
  OBART07G20580.1 239 HKCSICRLEFPSGQALGGHMRVH 261
                      79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.38E-8191261No hitNo description
PfamPF139121.5E-8192216IPR007087Zinc finger, C2H2
PROSITE profilePS501578.663193215IPR007087Zinc finger, C2H2
SMARTSM003550.89193215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
PROSITE profilePS501578.621239261IPR007087Zinc finger, C2H2
PfamPF139128.1E-9239261IPR007087Zinc finger, C2H2
SMARTSM003550.025239261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
METDGMINMP LASSSGGNNI MGPHDSPARC VEYSYSPTCR YGTFATGGCD SFMAFGTALT  60
KVPQPSNTHV TSLLVFQQGW PSASLSHPGA RRFHTTMRLN EKPLVPPLSP TPVDFRAHQV  120
FPSKHHDFDT SKSRNISGSV AIGSDSEEEY LATSLLMLAH GIRDETKDIR GMGDVKGVGV  180
DTLELVKPSQ RAYECSVCGK VYWCYQALGG HMTCHRNLFA QVVAGDELSS DGTMVVKGHK  240
CSICRLEFPS GQALGGHMRV HYVGGVEAGS VKEKNVVKTK VTGALKLVLK DFDLNVPVVA  300
TMVGDEAESS HSEAKARMMT LP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0051490.0AP005149.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0005G07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAY3952940.0AY395294.1 Oryza sativa (japonica cultivar-group) C2H2-type zinc finger transcription factor (ZFP39) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647208.11e-163zinc finger protein AZF3
TrEMBLA0A0D3GSZ80.0A0A0D3GSZ8_9ORYZ; Uncharacterized protein
STRINGOBART07G20580.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.11e-22C2H2 family protein