PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G19250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 313aa    MW: 34780.1 Da    PI: 8.4647
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G19250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.8e-06285307223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +Cp+C+k F+++ +L+ H  + H
  OBART07G19250.1 285 VCPKCSKAFRDPVLLVEHVERdH 307
                      7*****************99888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.54E-6637No hitNo description
Gene3DG3DSA:4.10.1110.101.8E-10114172IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.73E-9116168No hitNo description
PfamPF014283.9E-8124163IPR000058Zinc finger, AN1-type
SMARTSM003550.45247270IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280249270IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767284312IPR007087Zinc finger, C2H2
SMARTSM003558284307IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280286307IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHNCCFNKN EIDLRQNLKQ GLRMQWVFCL  60
QHRSYTSHQC PNANQKDVTV LICPLCAKGV RLNPNEDPNI TWDTHVNSDC DPSNYQKVTK  120
KKKCPVPGCR ETLTFSNTIR CKDCTKEHCL KHRFGPDHKC PGPRKPESTF PFGNMLRRSQ  180
KAESRSNSNS SSTSSSWWSS SLLTAATSFK SSAEAGMQKL STATTQAIQK AKDGISTSSS  240
NSGDLVEQCV QCPARFSTVG ALIEHCEKSH QSNSQSSRSR VTVDVCPKCS KAFRDPVLLV  300
EHVERDHGGT SRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039810.0AP003981.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1019_E02.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644892.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B90.0SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A0D3GSK80.0A0A0D3GSK8_9ORYZ; Uncharacterized protein
STRINGOBART07G19250.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-109C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]