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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART07G19250.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
C2H2 |
Protein Properties |
Length: 313aa MW: 34780.1 Da PI: 8.4647 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART07G19250.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 18.7 | 4.8e-06 | 285 | 307 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+Cp+C+k F+++ +L+ H + H
OBART07G19250.1 285 VCPKCSKAFRDPVLLVEHVERdH 307
7*****************99888 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MGTPEFPNLG KHCSVGDCNQ IDFLPFTCDR CDHNCCFNKN EIDLRQNLKQ GLRMQWVFCL 60 QHRSYTSHQC PNANQKDVTV LICPLCAKGV RLNPNEDPNI TWDTHVNSDC DPSNYQKVTK 120 KKKCPVPGCR ETLTFSNTIR CKDCTKEHCL KHRFGPDHKC PGPRKPESTF PFGNMLRRSQ 180 KAESRSNSNS SSTSSSWWSS SLLTAATSFK SSAEAGMQKL STATTQAIQK AKDGISTSSS 240 NSGDLVEQCV QCPARFSTVG ALIEHCEKSH QSNSQSSRSR VTVDVCPKCS KAFRDPVLLV 300 EHVERDHGGT SRA
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Functional Description ? help
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Source |
Description |
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003981 | 0.0 | AP003981.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1019_E02. |
GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
GenBank | CP012615 | 0.0 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |