PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G19130.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 650aa    MW: 68706.2 Da    PI: 6.9416
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G19130.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-08278300426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C++f+r G C+ Gd+C F+Hg
  OBART07G19130.1 278 VPCPNFRRPGGCPSGDSCEFSHG 300
                      79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.28E-1366147IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.8E-1566148IPR020683Ankyrin repeat-containing domain
SMARTSM002480.666899IPR002110Ankyrin repeat
PROSITE profilePS500889.21768100IPR002110Ankyrin repeat
PfamPF127964.7E-868136IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.90868144IPR020683Ankyrin repeat-containing domain
CDDcd002041.41E-1270147No hitNo description
PROSITE profilePS5008812.529104139IPR002110Ankyrin repeat
SMARTSM002480.0044104136IPR002110Ankyrin repeat
PROSITE profilePS5010313.995274302IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-4274301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5275303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-6278301IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6278300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4306339IPR000571Zinc finger, CCCH-type
SMARTSM0035621310333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MGELADLVVV PSQPPLAGGR RDRLAALLEL AAADDVDGLR GALAEGGEEA AELADGVGLW  60
YGRSKAYEAR TPLMVAATYG SAGVVSLLVG LGGCVDVNRR PGADGATALH CAASGGSRNA  120
VAVVKLLLAA GADPATPDSA GRFPADVILA PPASPDALGD LEVLLGRRRA LAVATSVASG  180
SSSPPLSSSP DEGNRSPSSR SSSLSPITVD RGKKEYPVDP TLPDIKSSVY ASDEFRMFAF  240
KVRPCSRAYS HDWTECPFVH PGENARRRDP RKHPYTAVPC PNFRRPGGCP SGDSCEFSHG  300
VFESWLHPSQ YRTRLCKEGA ACARRICFFA HDEDELRHVP HNSGAGLLSP RASSSIDMTA  360
AAALGLLPGS PTRHFAPPPV SPSAGSNGGA AAAHWLQGSR LRSSFNARDA AVDDLGMLLE  420
WESQYLGALC LPPSSRPQPR LSAGLSIRPT IAPSNLEDMY ASDMAMSPRF PNDQGHSVYS  480
PAHKSALLNK LHQQKGLLSP VNTNRMYSPR ALDPSSLAHS PFGGMSPRSP RTVEPTSPLS  540
ARLPSVGSPR NSTAWGTVGS PMGKVDWGVD SEELVRLRRP AQPGFGEDET DVSWVQSLVS  600
NAELNGKRGE VQGMPGTSAL MNRPDLNNQG DLLDQTVIGA WLEQMHLDQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A4e-1124033314118RING finger protein unkempt homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647507.10.0zinc finger CCCH domain-containing protein 50
RefseqXP_015647508.10.0zinc finger CCCH domain-containing protein 50
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A0D3GSJ50.0A0A0D3GSJ5_9ORYZ; Uncharacterized protein
STRINGOBART07G19130.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-124CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]