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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART07G13960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 189aa MW: 20639.2 Da PI: 9.7161 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11 | 0.00077 | 84 | 115 | 18 | 54 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ L++++ + +K + a++L +A++YIk L OBART07G13960.1 84 DKITALQQIVSPF-----GKTDTASVLYEAINYIKWL 115 7888899999887.....8***************966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.775 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-8 | 81 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-10 | 81 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.13E-4 | 84 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MDKPPPPPPS SAPARTSSAD YKKQQGQQEI SSPVKTSSSG GGGKEGKKKR SEEAAGSEGS 60 TKKSKHEATS PTSSLKVPKV KLGDKITALQ QIVSPFGKTD TASVLYEAIN YIKWLHEQVQ 120 LLSDPYMKSS SSKDYNAWGG LDRKEKADAE VDLRSRGLCL VPVSCTPQVY RDNNGPDYWT 180 PPYRSCLYR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT836118 | 0.0 | CT836118.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122B23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658548.2 | 1e-118 | PREDICTED: uncharacterized protein LOC102714306 | ||||
Swissprot | Q9FYJ6 | 6e-48 | BH111_ARATH; Transcription factor bHLH111 | ||||
TrEMBL | A0A0D3GQV0 | 1e-135 | A0A0D3GQV0_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0AJH8 | 1e-133 | A0A0E0AJH8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | Q8L4Y9 | 1e-134 | Q8L4Y9_ORYSJ; BHLH transcription factor-like protein | ||||
STRING | OGLUM07G12960.1 | 1e-133 | (Oryza glumipatula) | ||||
STRING | OBART07G13960.1 | 1e-136 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7169 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 1e-46 | bHLH family protein |