PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G05360.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1601aa    MW: 179462 Da    PI: 8.2453
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G05360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-14116214199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+l++sd+  ++r+ +p + a++      + k  ++  l+++d++g  +++ +   ++++r++l+k Wk+F ++ +  +gD v+F++ + ++
  OBART07G05360.1 116 FVKTLMSSDAEYRDRFAVPMDVAKDVfpplvDAKAVQP--LIVKDLQGSPMTFDY--GRNGNRVTLAKVWKKFRDDMDFVDGDNVIFMRRR-DD 204
                      89*********************999**9986666676..9**************..*******************************544.88 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                       el+v+v+r+
  OBART07G05360.1 205 DELYVGVRRQ 214
                      889*****97 PP
2B346.85.2e-15491589198
                      EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k lt  d+ k+  r+++pk+ a+     +++ +e++ l ++d +g++W ++++++ +   ++l++GW +F++an+L +gD vvF+++  +++
  OBART07G05360.1 491 FVKPLTCTDAVKNrYRFIVPKREAAMGvlpQLQLNEHVPLYIKDMHGKEWVINYTWKEYT--HMLSSGWIKFANANRLVTGDNVVFMRSM-DSG 581
                      56666655555554899*******766999555568888***************776665..99***********************765.444 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      e +++++r
  OBART07G05360.1 582 ERYMGLRR 589
                      44666655 PP
3B3331.1e-108589223299
                      --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++ l+++d++g  +++ +   ++++r++l+k Wk+F ++ +  +gD v+F++ + ++ el+v+v+r+
  OBART07G05360.1 858 GPMPLIVKDLQGSPMTFDY--GRNGNRVTLAKVWKKFRDDMDFVDGDNVIFMRRR-DDDELYVGVRRQ 922
                      567799*************..*******************************544.88889*****97 PP
4B346.85.2e-1511881286198
                       EEEE-..-HHHHT.T-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3    1 ffkvltpsdvlks.grlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88  
                       f+k lt  d+ k+  r+++pk+ a+     +++ +e++ l ++d +g++W ++++++ +   ++l++GW +F++an+L +gD vvF+++  +
  OBART07G05360.1 1188 FVKPLTCTDAVKNrYRFIVPKREAAMGvlpQLQLNEHVPLYIKDMHGKEWVINYTWKEYT--HMLSSGWIKFANANRLVTGDNVVFMRSM-D 1276
                       56666655555554899*******766999555568888***************776665..99***********************765.4 PP

                       EE..EEEEE- CS
               B3   89 efelvvkvfr 98  
                       ++e +++++r
  OBART07G05360.1 1277 SGERYMGLRR 1286
                       4444666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-16110216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.94E-16111220IPR015300DNA-binding pseudobarrel domain
CDDcd100175.45E-11114213No hitNo description
PROSITE profilePS5086310.926116215IPR003340B3 DNA binding domain
PfamPF023621.2E-11116214IPR003340B3 DNA binding domain
SMARTSM010191.0E-8116215IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-16488588IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-19489590IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-14490589No hitNo description
PfamPF023623.9E-11491588IPR003340B3 DNA binding domain
SMARTSM010194.0E-5491591IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155492591IPR003340B3 DNA binding domain
PfamPF065078.6E-7608682IPR010525Auxin response factor
SMARTSM010190.42812923IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-8857924IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-8858928IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-7859922IPR003340B3 DNA binding domain
PROSITE profilePS508638.374862923IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-1611851285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1911861287IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-1411871286No hitNo description
PfamPF023623.9E-1111881285IPR003340B3 DNA binding domain
SMARTSM010194.0E-511881288IPR003340B3 DNA binding domain
PROSITE profilePS5086313.15511891288IPR003340B3 DNA binding domain
PfamPF065078.6E-713051379IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1601 aa     Download sequence    Send to blast
MNQLWSAFNR AMWLACAAPN SGRLPAVGSM VFYFVDGHAE QFCQFPAPLL EQLAVPGPRV  60
FLCTVAAVRL RADALTNEAY ADITLDPVAD HDVPRLLPAP APAAAAGGQQ QQLRYFVKTL  120
MSSDAEYRDR FAVPMDVAKD VFPPLVDAKA VQPLIVKDLQ GSPMTFDYGR NGNRVTLAKV  180
WKKFRDDMDF VDGDNVIFMR RRDDDELYVG VRRQRTLDKP LRTRRSRPPT PLPVAVQEVI  240
AAAGRAAAGE QFTATYRSRQ DGDEFVVPRE VVEEGLRLRS RFTPEMEVEF VWALEDGAPP  300
SVGPHGKITA IHDTTWMWRS VEIGWTGGSE MNKYANFWQV RLVGSDDFAS AAPPPPLSPK  360
RLKSSEASAS ASAAAAKASP TSSAQAQQFS ITREMWRACA APKSGRLPAV GSFVYYFPDG  420
HAQQCPSRPP EPLPGRVFLC KVTAVRLDAT RNELFATMSL IPVARDQAIQ PQAPADPGPS  480
SPQVQTTLVS FVKPLTCTDA VKNRYRFIVP KREAAMGVLP QLQLNEHVPL YIKDMHGKEW  540
VINYTWKEYT HMLSSGWIKF ANANRLVTGD NVVFMRSMDS GERYMGLRRT LKPEPVSVDE  600
VIEAVWRAAR LEPFEVTYLS RQDGDEFVVP CGIVHNALRA KFTPGMVVNF VWAVEEDRLP  660
NVGPQGKVIA IENYATSIWR MIQVEWPSCA GMNRYVNFWQ IREVLGESSF EASTCIVRSQ  720
DYSPAPQRNL VNALQLPDGT KQLQQNKKSV SSSSTFRLFG KKMTPGVPPR RDTSGLSGQV  780
SLFSHYLPHD EDDGQASDLY CEEPDRDDED GLAAILHDTW ELPTRPVLRN VFRRLPRNTD  840
FDGATFLSKP WLALPCDGPM PLIVKDLQGS PMTFDYGRNG NRVTLAKVWK KFRDDMDFVD  900
GDNVIFMRRR DDDELYVGVR RQRTLDKPLR TRRSRPPTPL PVAVQEVIAA AGRAAAGEQF  960
TATYRSRQDG DEFVVPREVV EEGLRLRSRF TPEMEVEFVW ALEDGAPPSV GPHGKITAIH  1020
DTTWMWRSVE IGWTGGSEMN KYANFWQVRL VGSDDFASAA PPPPLSPKRL KSSEASPTSS  1080
AQAQQFSITR EMWRACAAPK SGRLPAVGSF VYYFPDGHAQ QCPSRPPEPL PGRVFLCKVT  1140
AVRLDATRNE LFATMSLIPV ARDQAIQPQA PADPGPSSPQ VQTTLVSFVK PLTCTDAVKN  1200
RYRFIVPKRE AAMGVLPQLQ LNEHVPLYIK DMHGKEWVIN YTWKEYTHML SSGWIKFANA  1260
NRLVTGDNVV FMRSMDSGER YMGLRRTLKP EPVSVDEVIE AVWRAARLEP FEVTYLSRQD  1320
GDEFVVPCGI VHNALRAKFT PGMVVNFVWA VEEDRLPNVG PQGKVIAIEN YATSIWRMIQ  1380
VEWPSCAGMN RYVNFWQIRE VLGESSFEAS TCIVRSQDYS PAPQRNLVNA LQLPDGTKQL  1440
QQNKKSVSSS STFRLFGKKM TPGVPPRRDT SGLSGQVSLF SHYLPHDEDD GQASDLYCEE  1500
PDRDDEDGLA AILHDTWELP TRPVLRNVFR RLPRNTDFDG ATFLSKPWLA LAVDGHNVVA  1560
DGRFHDIAFP HDRGARCVGS SRGWLVRGRG SRRRRGHRHH P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A1e-244141215363Auxin response factor 1
4ldx_B1e-244141215363Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882777.10.0B3 domain-containing protein Os07g0183300/Os07g0183600
SwissprotQ8H5060.0Y7833_ORYSJ; B3 domain-containing protein Os07g0183300/Os07g0183600
TrEMBLA0A0D3GN200.0A0A0D3GN20_9ORYZ; Auxin response factor
STRINGOBART07G05360.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157921114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.32e-28auxin response factor 2