PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART07G03450.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 163aa    MW: 16705.8 Da    PI: 11.915
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART07G03450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000844769123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  C ++F+ +  L  H++ H
  OBART07G03450.1 47 FPCLFCERTFRKSQALGGHQNAH 69
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.07E-54573No hitNo description
Gene3DG3DSA:3.30.160.606.3E-44573IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8034774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MDPSSSSWSA PASPPVELSL SLPPAAARSR DEAAPTAIVD GKQVRLFPCL FCERTFRKSQ  60
ALGGHQNAHR KERVAGGSWN PNVYGDGGGS ASMPIASHGV TAAGSAAALP ATTTQRRRPC  120
LPSAQARRRL APAPVSLRPK GALPAAASPA RSLSSSSASR SSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1497281e-154HM149728.1 Oryza sativa Japonica Group cultivar Padi Lasat prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497291e-154HM149729.1 Oryza sativa Japonica Group cultivar Padi Londeh Seluar prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497301e-154HM149730.1 Oryza sativa Japonica Group cultivar Rasi Pagalou prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497311e-154HM149731.1 Oryza sativa Japonica Group cultivar Bunian prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497321e-154HM149732.1 Oryza sativa Japonica Group cultivar Kutube prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497331e-154HM149733.1 Oryza sativa Japonica Group cultivar Lepqu prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497341e-154HM149734.1 Oryza sativa Japonica Group cultivar Libu prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497351e-154HM149735.1 Oryza sativa Japonica Group cultivar Lukip prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497361e-154HM149736.1 Oryza sativa Japonica Group cultivar Rathu Heenati prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497371e-154HM149737.1 Oryza sativa Japonica Group cultivar Chabli Chabol Glang prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497381e-154HM149738.1 Oryza sativa Japonica Group cultivar Kao King Lang prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497391e-154HM149739.1 Oryza sativa Japonica Group cultivar TP34 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497401e-154HM149740.1 Oryza sativa Japonica Group cultivar Lemont prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497411e-154HM149741.1 Oryza sativa Japonica Group cultivar Maybelle prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497421e-154HM149742.1 Oryza sativa Japonica Group cultivar Rosemont prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497431e-154HM149743.1 Oryza rufipogon bio-material 04WHCL prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497441e-154HM149744.1 Oryza rufipogon bio-material W1944 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497451e-154HM149745.1 Oryza rufipogon bio-material YD2-0069 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497461e-154HM149746.1 Oryza rufipogon bio-material YD2-0267 prostrate growth 1 (PROG1) gene, complete cds.
GenBankHM1497471e-154HM149747.1 Oryza rufipogon bio-material IRGC:104415 prostrate growth 1 (PROG1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646457.14e-67zinc finger protein GIS3
TrEMBLA0A0D3GME01e-109A0A0D3GME0_9ORYZ; Uncharacterized protein
STRINGOBART07G03450.11e-110(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP384714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.11e-10C2H2 family protein