PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART07G03450.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 163aa MW: 16705.8 Da PI: 11.915

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART07G03450.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00084	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C ++F+ + L H++ H OBART07G03450.1 47 FPCLFCERTFRKSQALGGHQNAH 69 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.07E-5	45	73	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.3E-4	45	73	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.803	47	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MDPSSSSWSA PASPPVELSL SLPPAAARSR DEAAPTAIVD GKQVRLFPCL FCERTFRKSQ 60 ALGGHQNAHR KERVAGGSWN PNVYGDGGGS ASMPIASHGV TAAGSAAALP ATTTQRRRPC 120 LPSAQARRRL APAPVSLRPK GALPAAASPA RSLSSSSASR SSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM149728	1e-154	HM149728.1 Oryza sativa Japonica Group cultivar Padi Lasat prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149729	1e-154	HM149729.1 Oryza sativa Japonica Group cultivar Padi Londeh Seluar prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149730	1e-154	HM149730.1 Oryza sativa Japonica Group cultivar Rasi Pagalou prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149731	1e-154	HM149731.1 Oryza sativa Japonica Group cultivar Bunian prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149732	1e-154	HM149732.1 Oryza sativa Japonica Group cultivar Kutube prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149733	1e-154	HM149733.1 Oryza sativa Japonica Group cultivar Lepqu prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149734	1e-154	HM149734.1 Oryza sativa Japonica Group cultivar Libu prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149735	1e-154	HM149735.1 Oryza sativa Japonica Group cultivar Lukip prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149736	1e-154	HM149736.1 Oryza sativa Japonica Group cultivar Rathu Heenati prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149737	1e-154	HM149737.1 Oryza sativa Japonica Group cultivar Chabli Chabol Glang prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149738	1e-154	HM149738.1 Oryza sativa Japonica Group cultivar Kao King Lang prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149739	1e-154	HM149739.1 Oryza sativa Japonica Group cultivar TP34 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149740	1e-154	HM149740.1 Oryza sativa Japonica Group cultivar Lemont prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149741	1e-154	HM149741.1 Oryza sativa Japonica Group cultivar Maybelle prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149742	1e-154	HM149742.1 Oryza sativa Japonica Group cultivar Rosemont prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149743	1e-154	HM149743.1 Oryza rufipogon bio-material 04WHCL prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149744	1e-154	HM149744.1 Oryza rufipogon bio-material W1944 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149745	1e-154	HM149745.1 Oryza rufipogon bio-material YD2-0069 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149746	1e-154	HM149746.1 Oryza rufipogon bio-material YD2-0267 prostrate growth 1 (PROG1) gene, complete cds.
GenBank	HM149747	1e-154	HM149747.1 Oryza rufipogon bio-material IRGC:104415 prostrate growth 1 (PROG1) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015646457.1	4e-67	zinc finger protein GIS3
TrEMBL	A0A0D3GME0	1e-109	A0A0D3GME0_9ORYZ; Uncharacterized protein
STRING	OBART07G03450.1	1e-110	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP384	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	1e-10	C2H2 family protein