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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OBART07G02420.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
C3H |
| Protein Properties |
Length: 358aa MW: 37157.2 Da PI: 6.0774 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART07G02420.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 24.4 | 5.2e-08 | 241 | 267 | 2 | 27 |
-S---SGGGGTS.--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartG.tCkyGdrCkFaHgp 27
kt+lC ++ G C++G++Ck+aHg+
OBART07G02420.1 241 KTKLCAEYYSRGlGCPRGNTCKYAHGE 267
7999988888888************96 PP
|
| 2 | zf-CCCH | 26.9 | 8.3e-09 | 302 | 328 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+lC++f +G C + ++C+FaHg+
OBART07G02420.1 302 YKTKLCKTFTSGGLCLFAANCRFAHGE 328
9************************96 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 9.16E-7 | 238 | 272 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.479 | 239 | 268 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.018 | 239 | 267 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.0E-6 | 241 | 267 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.4E-10 | 241 | 271 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-12 | 300 | 331 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.06E-8 | 301 | 331 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.202 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.9E-6 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.7E-5 | 302 | 328 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.934 | 331 | 358 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.19 | 332 | 358 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.22E-5 | 333 | 357 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 8.0E-4 | 333 | 357 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 358 aa
Download sequence Send
to blast |
MADSEDGDHA ATTTTEQRYD DDGHLVPSSG GQEEEGSGGH DVVVPGGHVA EDYRSGVGVP 60
VGRDAGGATS SPPQPVHVTP SILVGSIHAP VFQGELVGMK FGVGSGSMGA GTSATRRLPA 120
TEAGHVSPFL GLPYATAFDS PLDRELVGPS SAPPPCSAAS RAWLVRCSSP LSDSEWTRRS 180
ILAREAAHTP ASTVTGRGRF EFVPIPGAPY APPPSFAPIA AGAGPAARPL QQLAFGLEEH 240
KTKLCAEYYS RGLGCPRGNT CKYAHGEDDL RLVVAVSSLA DAGEDSSSSD SSSPALGGGD 300
KYKTKLCKTF TSGGLCLFAA NCRFAHGEVE LGKKEPCWYF FTGQTCPRGD TCGFRHSY
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| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003829 | 0.0 | AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01. |
| GenBank | AP004314 | 0.0 | AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05. |
| GenBank | AP014963 | 0.0 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. |
