PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G24960.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 354aa    MW: 40357.2 Da    PI: 9.1223
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G24960.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-071437126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ykt+lC  +++ G+C++ ++C+FaHg
  OBART06G24960.2 14 YKTKLCALWRQ-GECNR-ASCSFAHG 37
                     9**********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.4E-12844IPR000571Zinc finger, CCCH-type
SMARTSM003560.00231338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3241339IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-51437IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MREMMGPPRR GPAYKTKLCA LWRQGECNRA SCSFAHGDAE LRGPPPRSPF PPRGGPGRRD  60
HRPDDFRGRH LRPHRRNSPE RDARDHLFRD HRPRSRDRGS SHSRSPIRKR YGARGRHRKK  120
LEGGKTNSSE SLNSSDNEDR KKDDRFNKAD DKHDNEAQLQ RIQLDMEALH EEKSSLEVIL  180
NGKINEASKL SSRIADLESQ LNDEKEACER SQARFERFAD LLASDTLKPC SKDQGSSAAK  240
EDPYNAYEMS PSDQRQNHET TRKRSVALST SEEGRNGKKR RESYDNRDPM SEKYRPEDAL  300
EPFQSSKGTE AKELLSVKKN LGDGDNNEKG NVVSSANVFT DRYEGGDDDD VLVD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261280RKRSVALSTSEEGRNGKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0648160.0AK064816.1 Oryza sativa Japonica Group cDNA clone:J013000E13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644053.20.0zinc finger CCCH domain-containing protein 13-like isoform X1
SwissprotQ6H7U26e-89C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBLA0A0D3GK020.0A0A0D3GK02_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0ADE20.0A0A0E0ADE2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0Q1R00.0A0A0E0Q1R0_ORYRU; Uncharacterized protein
STRINGOGLUM06G26340.20.0(Oryza glumipatula)
STRINGORUFI06G26900.20.0(Oryza rufipogon)
STRINGOBART06G24960.20.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38822943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.11e-06C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]