PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 305aa MW: 32377.7 Da PI: 9.0408

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G24250.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.4	6.8e-13	78	122	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +++g +t q++s+ qky OBART06G24250.1 78 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 122 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.92E-16	72	128	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.628	73	127	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.1E-18	76	125	IPR006447	Myb domain, plants
SMART	SM00717	2.7E-10	77	125	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-6	77	118	IPR009057	Homeodomain-like
Pfam	PF00249	1.1E-10	78	122	IPR001005	SANT/Myb domain
CDD	cd00167	6.90E-8	80	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MSTTPNPIDA SVVSAAAAVA GGGGGGDGGG GGGGKEKEKQ VVAAPLQPPM AVPAPAAAAA 60 MGEEARKVRK PYTITKSRES WTEPEHDKFL EALQLFDRDW KKIEAYVGSK TVIQIRSHAQ 120 KYFLKVQKNG TGEHLPPPRP KRKAAHPYPQ KASKNVSPAA ISQPPPLGEQ GCVMSMDTSP 180 VIRNTNPSAV VPSWDNSIAQ PLSASRTQGT GAVATNNCSS SIESPSTTWP TSEAVEQENM 240 LRPLRAMPDF AQVYSFLGSI FDPDTSGHLQ TLKAMDPIDV ETVLLLMRNL SMNLTSPNFA 300 AHGNK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070871	0.0	AK070871.1 Oryza sativa Japonica Group cDNA clone:J023073K02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643725.1	0.0	protein REVEILLE 6 isoform X3
Swissprot	Q8H0W3	1e-92	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A0D3GJR3	0.0	A0A0D3GJR3_9ORYZ; Uncharacterized protein
STRING	OBART06G24250.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1096	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	1e-79	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]