PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G23730.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 155aa MW: 17018.3 Da PI: 9.0487

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G23730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.3	2.1e-15	1	47	10	56
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 + +NRe+ArrsR+RK+a++ eLe v++L++eN++L k+l e +++ OBART06G23730.1 1 MVSNRESARRSRRRKQAQLSELESQVEQLKGENSSLFKQLTESSQQF 47 579**********************************8888877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	1.6E-12	1	46	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-10	1	47	No hit	No description
PROSITE profile	PS50217	10.002	1	48	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.2E-11	2	47	No hit	No description
SMART	SM00338	9.1E-9	3	56	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MVSNRESARR SRRRKQAQLS ELESQVEQLK GENSSLFKQL TESSQQFNTA VTDNRILKSD 60 VEALRVKVKM AEDMVARAAM SCGLGQLGLA PLLSSRKMCQ ALDMLSLPRN DACGFKGLNL 120 GRQVQNSPVQ SAASLESLDN RLSSEVTSCS ADVWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	8	15	RRSRRRKQ
2	10	15	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB053474	0.0	AB053474.1 Oryza sativa mRNA for RISBZ5, complete cds.
GenBank	CT832853	0.0	CT832853.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113E18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643805.1	1e-105	bZIP transcription factor RISBZ5
Swissprot	Q654B3	1e-107	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	A0A0D3GJK4	1e-106	A0A0D3GJK4_9ORYZ; Uncharacterized protein
TrEMBL	I1Q4C5	1e-104	I1Q4C5_ORYGL; Uncharacterized protein
STRING	ORGLA06G0198800.1	1e-105	(Oryza glaberrima)
STRING	OBART06G23730.1	1e-107	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	4e-29	basic leucine zipper 9

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]