PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G22040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 621aa MW: 63913.9 Da PI: 4.5644 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33.6 | 9.9e-11 | 121 | 172 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr + r+vAeI+ p+ r +lg+f+tae+ a a++aa++ l+ge OBART06G22040.1 121 TKYRGVRVRF-GTRYVAEIHNPT----GaGRLWLGTFDTAEQGAWAYDAAARVLRGE 172 69********.8*********95....258************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.9E-5 | 121 | 172 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.83E-19 | 121 | 178 | No hit | No description |
SMART | SM00380 | 6.6E-18 | 122 | 186 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-21 | 122 | 179 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.701 | 122 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-15 | 122 | 179 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MDPEERVAEA MKGLLVEYSQ QSARLAVQVR GNEYRRAAAA GGGGGFLLSP GERERLRAGS 60 GLELVIVPVM EGDQVVSSSA SAEVLVSPLV EGEVRVVPAV ERRRWRRQAA AEEWEEIDPE 120 TKYRGVRVRF GTRYVAEIHN PTGAGRLWLG TFDTAEQGAW AYDAAARVLR GEAAATNFGD 180 PAQAPSPLSA EMRSMLAFFD RARARRERVV EERGAAAAEA EASEAPAPAP LLLLPAPPPS 240 SDVSPVTVQV AAPPSSSDAA PVPATLLSDA SPVIVQVPVP PSSDAAPVPA PTLSDASPVP 300 VQVPVPPPAA TAAAAAPVPK KRKLLTASTL SGSGGPRRGR RRVAEATFAG RGRGVWSGRR 360 RGRGRIPTEV TVGTPSPSAP TPAPASATAP LIQSNVVISP VPPTLAASSI AAWPPVPAIP 420 ELTTVAAAPL PEKPVLTAHD VVMATLFPNG VFSYTAGSSH APPPPPPPPP VASGSFFQEV 480 IPPGGVPTNY AIHEAPDFDP NVFFADVPDG EQDEPVLLSS TSTLLDIDNS LTLVADDAAS 540 SAQAAVDVAS SSAQAAIDVP SSSVLAVVDV PSSSAQAAID VPASSAQAAT DVASLSTQCA 600 AGNERPIVFV FDLNEPASNF E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005386 | 0.0 | AP005386.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0019I19. | |||
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881953.1 | 1e-138 | calphotin | ||||
TrEMBL | A0A0D3GJ02 | 0.0 | A0A0D3GJ02_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G22040.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13787 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 4e-12 | ERF domain protein 12 |