PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

OBART06G20960.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 325aa MW: 34368.6 Da PI: 7.7895

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G20960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.6e-09	156	203	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq OBART06G20960.1 156 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 203 8*************************94....22445556666666666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	7.59E-5	91	101	No hit	No description
CDD	cd00083	1.14E-9	150	207	No hit	No description
SuperFamily	SSF47459	2.75E-15	150	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-14	152	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	156	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-8	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF101447	7.59E-5	283	301	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MRHHSPPPPP DLSSDVGEIH PPLASAARSS SNGGGSGGSF TALLGLPTSQ AMELLLPTAA 60 ASAPPPPPAF PADPHLVDRA ARFSAFASPS PPSPPPPPPP PLSSSSTRKP DPASKGKAAA 120 KKGKTAASGE DGGDGGEDEK PAYVHVRARR GQATDSHSLA ERARREKINA RMELLKELVP 180 GCSKVSGTAL VLDEIINHVQ SLQRQVEYLS MRLAAVNPRV DFGGLDNFLT TECGRITGLN 240 YKNGMDLEQV TWPDMGVHGA RNLMQLQQQF WHGDLAHPLQ PPSQWEKRTD TNPPVFSNSS 300 SSLFGYDLAS SGAPAQTGNK LKTEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070970	0.0	AK070970.1 Oryza sativa Japonica Group cDNA clone:J023066J03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641463.1	0.0	transcription factor bHLH48 isoform X2
Swissprot	Q8VZ02	6e-61	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A0D3GIN5	0.0	A0A0D3GIN5_9ORYZ; Uncharacterized protein
STRING	OBART06G20960.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	7e-51	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]