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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART06G20890.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
C2H2 |
Protein Properties |
Length: 224aa MW: 24903.2 Da PI: 8.2559 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART06G20890.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 57 | 76 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
OBART06G20890.1 57 FSCPVCYKTFNRYNNMQMHM 76
89*****************9 PP
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2 | zf-C2H2 | 15.1 | 6.6e-05 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C +Cgk F + + ++H +++
OBART06G20890.1 141 FMCRKCGKAFAVRGDWRTHEKNC 163
89*****************9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MQVEEEGGEE EDEDEAAAAA ATATLPLGCA SIGIGKLTKG QYWIPTPSQI LIGPTQFSCP 60 VCYKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTAMLR LPCYCCAAGC RNNIDHPRAR 120 PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCA CGSDFKHKRS 180 LKDHIRAFGR GHAACGIDSF DDLDADDDPS SDLDHASASA SRVG
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK071104 | 0.0 | AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence. |