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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART06G16360.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
M-type_MADS |
Protein Properties |
Length: 259aa MW: 28016.5 Da PI: 7.3569 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART06G16360.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 57.4 | 1.8e-18 | 20 | 62 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
i+ k +rqvtfskRr g++KKA+E+S+L +a va++ fs+ g+
OBART06G16360.1 20 IDGKEKRQVTFSKRRRGLFKKASEISTLSGASVAIVSFSKAGN 62
78899**********************************9985 PP
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2 | SRF-TF | 77.5 | 1e-24 | 68 | 115 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
ri+n+ +rqvtfskRrng++KKA+ELS+LC+a vav+ fss g+++ +
OBART06G16360.1 68 RIDNSGRRQVTFSKRRNGLFKKASELSTLCGASVAVVAFSSAGNVFAF 115
8*******************************************9987 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.6E-13 | 10 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.2E-17 | 10 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.203 | 10 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 9.43E-19 | 11 | 62 | No hit | No description |
Pfam | PF00319 | 8.1E-18 | 20 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.866 | 59 | 119 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-20 | 61 | 81 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.75E-24 | 62 | 129 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-26 | 63 | 118 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-24 | 68 | 115 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-20 | 81 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-20 | 96 | 117 | IPR002100 | Transcription factor, MADS-box |
Sequence ? help Back to Top |
Protein Sequence Length: 259 aa
Download sequence Send
to blast |
MGRPRGGTSK GKQKIEMCCI DGKEKRQVTF SKRRRGLFKK ASEISTLSGA SVAIVSFSKA 60 GNRIEIRRID NSGRRQVTFS KRRNGLFKKA SELSTLCGAS VAVVAFSSAG NVFAFGQPTV 120 DAVVRRFDPL HADGADPAPA AVEDGGGGGD DVVVADPEEL DALRRAEEQT KAQVAAEQAR 180 MRDVGDKVTQ AMAGRTLWWE ADVEALGEAE LPEFVRALER LRDSVRRHAS TLASTATPLP 240 PPPEQEEEVP ELDVSDYSF
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003951 | 0.0 | AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01. |
GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |