PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART06G10160.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 341aa    MW: 37883 Da    PI: 9.0111
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART06G10160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.91.4e-104989444
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44
                      k +rr+++NReAAr+sR RKka+i++Le    +L    ++
  OBART06G10160.1 49 QKMQRRLAQNREAARKSRMRKKAYIQQLESSRSKLMHLEQE 89
                     589**************************977777655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.3E-746145IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.5884892IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.06E-75093No hitNo description
PfamPF001701.2E-75090IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.4E-85094No hitNo description
PROSITE patternPS0003605368IPR004827Basic-leucine zipper domain
PfamPF141441.7E-31135211IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAPSSLLIIF FLLPTSRSSA LGGGDGGDDA GEQRGADSSA VSKERRGDQK MQRRLAQNRE  60
AARKSRMRKK AYIQQLESSR SKLMHLEQEL QRARQQGIFI ATGGSGDHGH SIGGNGGTLA  120
FDLEYARWLD EHQRHINDLR VALNTQMSDD ELRELVDAVM MHYDQVFRLK SFATKSDVFH  180
VLSGMWMSPA ERFFMWLGGF RSSELLKVLA SHLEPLTDQQ LMGICNLQQS SQQAEDALSQ  240
GMEALQQTLG DTLASAAATV VGGGGGADNV TNYMGQMAIA MAKLTTLENF LRQADLLRHQ  300
TLQQMHRILT TRQAARALLV ISDYFSRLRA LSSLWLARPR D
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1097190.0AK109719.1 Oryza sativa Japonica Group cDNA clone:002-146-A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642107.10.0transcription factor TGAL3-like isoform X1
RefseqXP_025881815.10.0transcription factor TGAL3-like isoform X2
SwissprotQ5Z6N90.0TGAL3_ORYSJ; Transcription factor TGAL3
TrEMBLA0A0D3GF460.0A0A0D3GF46_9ORYZ; Uncharacterized protein
STRINGOBART06G10160.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-121bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]