 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART06G07100.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 188aa MW: 20816.9 Da PI: 11.6371 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART06G07100.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 71.1 | 2.1e-22 | 1 | 101 | 239 | 353 |
GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
+vv+eqe++hn++ + erf+eal+yy++ + +r s er+ vEr llg+ei+n+vac g errerhe rle aGF+ vpls++
OBART06G07100.1 1 MVVTEQEVSHNAAGLTERFVEALNYYAV-------GGARGSVERTRVERWLLGEEIKNIVACDGGERRERHE-------RLEGAGFGRVPLSYY 80
79************************75.......345899******************************9.......999************ PP
GRAS 333 aakqaklllrkvksdgyrvee 353
a qa+++ + + dg++
OBART06G07100.1 81 ALLQARRVAQGLGCDGFKRRR 101
****************98665 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 188 aa
Download sequence Send
to blast |
MVVTEQEVSH NAAGLTERFV EALNYYAVGG ARGSVERTRV ERWLLGEEIK NIVACDGGER 60
RERHERLEGA GFGRVPLSYY ALLQARRVAQ GLGCDGFKRR RRPGIAAVEV AMAALPHTRA 120
PVSGHSHLVL ASLRRPPGPS PISRMRLGAA EKREARESGF LLRQPRRLPP RRSPPRGSLS 180
QFPSICIH
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003458 | 1e-152 | AP003458.4 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0701E03. |
| GenBank | AP004687 | 1e-152 | AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04. |
| GenBank | AP014962 | 1e-152 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
