PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G03090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 526aa MW: 55923.7 Da PI: 7.4518 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.6 | 1.7e-30 | 275 | 334 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+ OBART06G03090.1 275 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 334 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.9E-32 | 260 | 334 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-27 | 268 | 335 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.311 | 270 | 336 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-37 | 275 | 335 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-27 | 276 | 334 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MIKGDSKQLA SMYMKEEMIK GERQLGTHED RLKDEVIKDG DKISDGNFFK SLQNISSTKE 60 EVCSPGPIER SCMDSSLLNM KAQNKGQDDK LESTRAEMGE VREENERLKT LLSRISHDYR 120 SLQTHFYDVL QQGRAKKLPD SPATDIEEPE FVSLRLGTSR SKCKKEDKST TSSEVKGSTE 180 DFLKIKGGLS LGLSDCRVDA NNSEKVQPDV MTLSPEGSFE DARDDTAETT EQWPPSKMLK 240 NLRSVGAEAE DDIAPQPQVK KARVSVRARC DAPTMNDGCQ WRKYGQKIAK GNPCPRAYYR 300 CTVAAGCPVR KQVQRCADDM SILITTYEGT HNHPLSVSAT AMASTTSAAA SMLISGSSST 360 SLAAYPAAAA SPALAFDASS KPPLIGGRPI NGSRQQGGGG GGGSAPPLYQ MQQKAAAAAP 420 PPPSVITDTI AKAITADPSF HTALAAAITS YVGKKGSPPA SGGEDSKVEL KWGEHLGLGL 480 THSSPSTAAA AAASSSSQMF LQPSLGLSGS TTSASTSPVA NREQAH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-20 | 275 | 335 | 17 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 4e-20 | 275 | 335 | 17 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012614 | 0.0 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643468.1 | 0.0 | probable WRKY transcription factor 72 isoform X1 | ||||
Swissprot | A0A3Q7GFB5 | 6e-88 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A0D3GCT0 | 0.0 | A0A0D3GCT0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G03090.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5047 | 38 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 1e-65 | WRKY DNA-binding protein 72 |
Publications ? help Back to Top | |||
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