 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART06G03050.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
Whirly |
| Protein Properties |
Length: 272aa MW: 30168.4 Da PI: 9.5887 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART06G03050.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 193 | 4.6e-60 | 97 | 235 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94
s+yk+kaa++++++ p+f+ ldsg+ k+ ++G++ll++a+a+a+r+ydW +kq+f+ls+ e+++l+ l++ +sceffhdp+++ s+eGkvrk+l
OBART06G03050.1 97 SIYKGKAAMSLDPRPPQFVPLDSGAYKVVKEGFVLLQFAPAVATRQYDWTRKQVFSLSVWEMGSLLTLGPTDSCEFFHDPFKGRSDEGKVRKVL 190
7********************************************************************************************* PP
Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
kveP pdG f+nlsv+n+l++ +e++++P++k+efav+ s ++
OBART06G03050.1 191 KVEPTPDGNSRFFNLSVQNHLLNIDENIYIPITKGEFAVIVSTFN 235
****************************************99875 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006281 | Biological Process | DNA repair |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045910 | Biological Process | negative regulation of DNA recombination |
| GO:0009508 | Cellular Component | plastid chromosome |
| GO:0009570 | Cellular Component | chloroplast stroma |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MPPPSPPLFL SLPLPPPPPL PHLLPSHRPA AALTLAPALS SRRVSSVCPV ASQRHSDYFD 60
PRAPPPPPPR DGYGGPAYSP PAAQGGQQNG RVFSTYSIYK GKAAMSLDPR PPQFVPLDSG 120
AYKVVKEGFV LLQFAPAVAT RQYDWTRKQV FSLSVWEMGS LLTLGPTDSC EFFHDPFKGR 180
SDEGKVRKVL KVEPTPDGNS RFFNLSVQNH LLNIDENIYI PITKGEFAVI VSTFNYIIPH 240
LMGWSTFTNS IKPEDSRAYT RPQSGPEYEW RR
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 2e-90 | 91 | 270 | 37 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 2e-90 | 91 | 270 | 37 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 2e-90 | 91 | 270 | 37 | 218 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 2e-90 | 91 | 270 | 37 | 218 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Single-stranded DNA and RNA binding protein that maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. Functions in RNA metabolism and is involved in the maturation of the atpF and 23S ribosomal RNAs. {ECO:0000269|PubMed:18676978, ECO:0000269|PubMed:19666500}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CT836194 | 0.0 | CT836194.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA048P18, full insert sequence. |
