PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART06G02540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 205aa MW: 22309.7 Da PI: 10.1848 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.9 | 1e-19 | 45 | 96 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++k+q +Lee+F+ +++++ +++ LAk+l+L rqV vWFqNrRa+ k OBART06G02540.1 45 LRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTK 96 5789**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125 | 3.5e-40 | 44 | 132 | 3 | 92 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 k+rlsk+q+++LEe+F+++++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+++n+rL+ke +eLr +lk OBART06G02540.1 44 KLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR-ALK 132 99***********************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.15E-18 | 32 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.309 | 38 | 98 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-15 | 40 | 102 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.5E-17 | 45 | 96 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.27E-14 | 46 | 99 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 47 | 96 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 73 | 96 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.3E-19 | 98 | 141 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 3.6E-11 | 98 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MERQGLDLGL SLGLGLTTAA TWPAAGFCLN SGMAEQEVIR RDDKLRLSKD QAAVLEECFK 60 THHTLTPKQK VALAKSLNLR PRQVEVWFQN RRARTKLKQT EVDCEHLKRW CDQLADDNRR 120 LHKELAELRA LKATPTPPAA APPLTTLTMC LSCKRVANAG VPSPAAAMFP GHPQFLCGFR 180 DHAGAASSSY GGASSGLAKG VRAAR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 98 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT830896 | 0.0 | CT830896.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014L20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642539.1 | 1e-101 | homeobox-leucine zipper protein HOX28 | ||||
Swissprot | A2Y931 | 1e-102 | HOX28_ORYSI; Homeobox-leucine zipper protein HOX28 | ||||
Swissprot | Q5VPE5 | 1e-102 | HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28 | ||||
TrEMBL | A0A0D3GCK9 | 1e-148 | A0A0D3GCK9_9ORYZ; Uncharacterized protein | ||||
STRING | OBART06G02540.1 | 1e-149 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3842 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 5e-45 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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